Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 75404 | 0.71 | 0.843774 |
Target: 5'- aGCG-GGAGCGGcgGcCGUGGcGGCGg -3' miRNA: 3'- aUGCuCCUUGCCuaUuGCGCCaCCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 106234 | 0.72 | 0.802049 |
Target: 5'- gACGAGGcGGCGGcgGugGCGuUGGCa -3' miRNA: 3'- aUGCUCC-UUGCCuaUugCGCcACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 155556 | 0.74 | 0.698751 |
Target: 5'- gACGAGGAcGCGGAgccCGCGGcUGGUa -3' miRNA: 3'- aUGCUCCU-UGCCUauuGCGCC-ACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 173650 | 0.75 | 0.648951 |
Target: 5'- gGCGucuGGGAgGaGGUGGCgGCGGUGGCGg -3' miRNA: 3'- aUGCu--CCUUgC-CUAUUG-CGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 147902 | 0.76 | 0.598821 |
Target: 5'- -uUGGGGccgUGGGUGGCGCGGUGGCc -3' miRNA: 3'- auGCUCCuu-GCCUAUUGCGCCACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 44014 | 1.08 | 0.007895 |
Target: 5'- cUACGAGGAACGGAUAACGCGGUGGCGa -3' miRNA: 3'- -AUGCUCCUUGCCUAUUGCGCCACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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