Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 44014 | 1.08 | 0.007895 |
Target: 5'- cUACGAGGAACGGAUAACGCGGUGGCGa -3' miRNA: 3'- -AUGCUCCUUGCCUAUUGCGCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 147902 | 0.76 | 0.598821 |
Target: 5'- -uUGGGGccgUGGGUGGCGCGGUGGCc -3' miRNA: 3'- auGCUCCuu-GCCUAUUGCGCCACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 173650 | 0.75 | 0.648951 |
Target: 5'- gGCGucuGGGAgGaGGUGGCgGCGGUGGCGg -3' miRNA: 3'- aUGCu--CCUUgC-CUAUUG-CGCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 155556 | 0.74 | 0.698751 |
Target: 5'- gACGAGGAcGCGGAgccCGCGGcUGGUa -3' miRNA: 3'- aUGCUCCU-UGCCUauuGCGCC-ACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 106234 | 0.72 | 0.802049 |
Target: 5'- gACGAGGcGGCGGcgGugGCGuUGGCa -3' miRNA: 3'- aUGCUCC-UUGCCuaUugCGCcACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 192035 | 0.71 | 0.819236 |
Target: 5'- gACGAGcGGcaGCGGc-GACGaCGGUGGCGg -3' miRNA: 3'- aUGCUC-CU--UGCCuaUUGC-GCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 75404 | 0.71 | 0.843774 |
Target: 5'- aGCG-GGAGCGGcgGcCGUGGcGGCGg -3' miRNA: 3'- aUGCuCCUUGCCuaUuGCGCCaCCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 135849 | 0.7 | 0.883645 |
Target: 5'- aGCGAGGGAucccgggccggagccCGGGgaggAGCGgGGUGGgGg -3' miRNA: 3'- aUGCUCCUU---------------GCCUa---UUGCgCCACCgC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 183457 | 0.7 | 0.880896 |
Target: 5'- -gUGAGGcGCGGAUAGCGCGccucGGCc -3' miRNA: 3'- auGCUCCuUGCCUAUUGCGCca--CCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 17317 | 0.7 | 0.887703 |
Target: 5'- --aGAGGAGgGGAaGACGCGGUuGCc -3' miRNA: 3'- augCUCCUUgCCUaUUGCGCCAcCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 142989 | 0.7 | 0.887703 |
Target: 5'- gGCgGAGGAGCcGGcGGCgGCGGUGGUGg -3' miRNA: 3'- aUG-CUCCUUGcCUaUUG-CGCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 1916 | 0.7 | 0.894293 |
Target: 5'- gGCGcuGGGCGcGGUGcugcccGCGCGGUGGCu -3' miRNA: 3'- aUGCucCUUGC-CUAU------UGCGCCACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 182205 | 0.7 | 0.87671 |
Target: 5'- gUGCGGGuGGCGGGcugcgucgccuucggUGACGuCGGUGGUGg -3' miRNA: 3'- -AUGCUCcUUGCCU---------------AUUGC-GCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 82704 | 0.7 | 0.880896 |
Target: 5'- aACaGGGuguACGGGUgGugGCGGUGGUGc -3' miRNA: 3'- aUGcUCCu--UGCCUA-UugCGCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 39870 | 0.69 | 0.91842 |
Target: 5'- -uCGAGGGGCGGGgggguguuuuUAGCGgGGgGGUGa -3' miRNA: 3'- auGCUCCUUGCCU----------AUUGCgCCaCCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 66825 | 0.69 | 0.906204 |
Target: 5'- gACGAGGAAgaguuacUGGcagccGCgGCGGUGGCGa -3' miRNA: 3'- aUGCUCCUU-------GCCuau--UG-CGCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 164898 | 0.69 | 0.91842 |
Target: 5'- cGCuGAGGGGgaGGAgGAgGCGGUGGCc -3' miRNA: 3'- aUG-CUCCUUg-CCUaUUgCGCCACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 150243 | 0.69 | 0.923883 |
Target: 5'- cUACGAGGc-CGGGgccaucGCGCGGcUGGCu -3' miRNA: 3'- -AUGCUCCuuGCCUau----UGCGCC-ACCGc -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 13941 | 0.69 | 0.91842 |
Target: 5'- aACu-GGGGCGGGc-GCGgGGUGGCGa -3' miRNA: 3'- aUGcuCCUUGCCUauUGCgCCACCGC- -5' |
|||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 200182 | 0.69 | 0.900035 |
Target: 5'- -gUGAGGAcaagaagACGGA--GCGUGGUGuGCGa -3' miRNA: 3'- auGCUCCU-------UGCCUauUGCGCCAC-CGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home