miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 5' -54.5 NC_001347.2 + 44014 1.08 0.007895
Target:  5'- cUACGAGGAACGGAUAACGCGGUGGCGa -3'
miRNA:   3'- -AUGCUCCUUGCCUAUUGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 147902 0.76 0.598821
Target:  5'- -uUGGGGccgUGGGUGGCGCGGUGGCc -3'
miRNA:   3'- auGCUCCuu-GCCUAUUGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 173650 0.75 0.648951
Target:  5'- gGCGucuGGGAgGaGGUGGCgGCGGUGGCGg -3'
miRNA:   3'- aUGCu--CCUUgC-CUAUUG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 155556 0.74 0.698751
Target:  5'- gACGAGGAcGCGGAgccCGCGGcUGGUa -3'
miRNA:   3'- aUGCUCCU-UGCCUauuGCGCC-ACCGc -5'
1764 5' -54.5 NC_001347.2 + 106234 0.72 0.802049
Target:  5'- gACGAGGcGGCGGcgGugGCGuUGGCa -3'
miRNA:   3'- aUGCUCC-UUGCCuaUugCGCcACCGc -5'
1764 5' -54.5 NC_001347.2 + 192035 0.71 0.819236
Target:  5'- gACGAGcGGcaGCGGc-GACGaCGGUGGCGg -3'
miRNA:   3'- aUGCUC-CU--UGCCuaUUGC-GCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 75404 0.71 0.843774
Target:  5'- aGCG-GGAGCGGcgGcCGUGGcGGCGg -3'
miRNA:   3'- aUGCuCCUUGCCuaUuGCGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 182205 0.7 0.87671
Target:  5'- gUGCGGGuGGCGGGcugcgucgccuucggUGACGuCGGUGGUGg -3'
miRNA:   3'- -AUGCUCcUUGCCU---------------AUUGC-GCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 183457 0.7 0.880896
Target:  5'- -gUGAGGcGCGGAUAGCGCGccucGGCc -3'
miRNA:   3'- auGCUCCuUGCCUAUUGCGCca--CCGc -5'
1764 5' -54.5 NC_001347.2 + 82704 0.7 0.880896
Target:  5'- aACaGGGuguACGGGUgGugGCGGUGGUGc -3'
miRNA:   3'- aUGcUCCu--UGCCUA-UugCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 135849 0.7 0.883645
Target:  5'- aGCGAGGGAucccgggccggagccCGGGgaggAGCGgGGUGGgGg -3'
miRNA:   3'- aUGCUCCUU---------------GCCUa---UUGCgCCACCgC- -5'
1764 5' -54.5 NC_001347.2 + 142989 0.7 0.887703
Target:  5'- gGCgGAGGAGCcGGcGGCgGCGGUGGUGg -3'
miRNA:   3'- aUG-CUCCUUGcCUaUUG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 17317 0.7 0.887703
Target:  5'- --aGAGGAGgGGAaGACGCGGUuGCc -3'
miRNA:   3'- augCUCCUUgCCUaUUGCGCCAcCGc -5'
1764 5' -54.5 NC_001347.2 + 1916 0.7 0.894293
Target:  5'- gGCGcuGGGCGcGGUGcugcccGCGCGGUGGCu -3'
miRNA:   3'- aUGCucCUUGC-CUAU------UGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 200182 0.69 0.900035
Target:  5'- -gUGAGGAcaagaagACGGA--GCGUGGUGuGCGa -3'
miRNA:   3'- auGCUCCU-------UGCCUauUGCGCCAC-CGC- -5'
1764 5' -54.5 NC_001347.2 + 198117 0.69 0.900662
Target:  5'- cGCGuuGA--GGAUAgucGCGCGGUGGCa -3'
miRNA:   3'- aUGCucCUugCCUAU---UGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 66825 0.69 0.906204
Target:  5'- gACGAGGAAgaguuacUGGcagccGCgGCGGUGGCGa -3'
miRNA:   3'- aUGCUCCUU-------GCCuau--UG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 164898 0.69 0.91842
Target:  5'- cGCuGAGGGGgaGGAgGAgGCGGUGGCc -3'
miRNA:   3'- aUG-CUCCUUg-CCUaUUgCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 13941 0.69 0.91842
Target:  5'- aACu-GGGGCGGGc-GCGgGGUGGCGa -3'
miRNA:   3'- aUGcuCCUUGCCUauUGCgCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 39870 0.69 0.91842
Target:  5'- -uCGAGGGGCGGGgggguguuuuUAGCGgGGgGGUGa -3'
miRNA:   3'- auGCUCCUUGCCU----------AUUGCgCCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.