miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 5' -54.5 NC_001347.2 + 150243 0.69 0.923883
Target:  5'- cUACGAGGc-CGGGgccaucGCGCGGcUGGCu -3'
miRNA:   3'- -AUGCUCCuuGCCUau----UGCGCC-ACCGc -5'
1764 5' -54.5 NC_001347.2 + 76159 0.68 0.929116
Target:  5'- gUACGAGGGguuGCGGAUGGaGCuG-GGCGg -3'
miRNA:   3'- -AUGCUCCU---UGCCUAUUgCGcCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 184383 0.68 0.93412
Target:  5'- gUGCGGGGAcgACGGGcguUGCGG-GGCu -3'
miRNA:   3'- -AUGCUCCU--UGCCUauuGCGCCaCCGc -5'
1764 5' -54.5 NC_001347.2 + 184732 0.68 0.93412
Target:  5'- gAUGAGG-ACGuGGcacaguuCGCGGUGGCGc -3'
miRNA:   3'- aUGCUCCuUGC-CUauu----GCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 80321 0.68 0.938893
Target:  5'- gAgGAGaGAACGGAaGAagaagaacaaGCGGUGGUGg -3'
miRNA:   3'- aUgCUC-CUUGCCUaUUg---------CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 74878 0.68 0.938893
Target:  5'- ----cGGggUGGA---UGCGGUGGCGg -3'
miRNA:   3'- augcuCCuuGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 151295 0.68 0.942995
Target:  5'- cUACGGGGAcACGGAcAGCGUGuuuguccgcuuucGUGGCc -3'
miRNA:   3'- -AUGCUCCU-UGCCUaUUGCGC-------------CACCGc -5'
1764 5' -54.5 NC_001347.2 + 228068 0.68 0.943439
Target:  5'- gGCGAGGGGauggguuuauUGGAUAucggugaagcaGCGUGGcGGCGa -3'
miRNA:   3'- aUGCUCCUU----------GCCUAU-----------UGCGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 225902 0.68 0.943439
Target:  5'- -cUGGGGAACGGGUcGGCGgcCGGUcGGCu -3'
miRNA:   3'- auGCUCCUUGCCUA-UUGC--GCCA-CCGc -5'
1764 5' -54.5 NC_001347.2 + 57297 0.68 0.951854
Target:  5'- -cUGAGGAuaaGCGGGaGAUGUGGaUGGCu -3'
miRNA:   3'- auGCUCCU---UGCCUaUUGCGCC-ACCGc -5'
1764 5' -54.5 NC_001347.2 + 142561 0.67 0.955729
Target:  5'- gACGAGGcuggcggcgucGGCGGG-AGCaGCGGgGGCGg -3'
miRNA:   3'- aUGCUCC-----------UUGCCUaUUG-CGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 182404 0.67 0.959386
Target:  5'- gUACGuGGAcGCGG---GCGUGGUGGUu -3'
miRNA:   3'- -AUGCuCCU-UGCCuauUGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 99180 0.67 0.962494
Target:  5'- gACGA-GAGCGcagccuucauauuGAUAACGCGGuUGGUGu -3'
miRNA:   3'- aUGCUcCUUGC-------------CUAUUGCGCC-ACCGC- -5'
1764 5' -54.5 NC_001347.2 + 173703 0.67 0.962829
Target:  5'- gGCGGuGGuuccgguacGCGGAaaaugAGCaGCGGUGGCGg -3'
miRNA:   3'- aUGCU-CCu--------UGCCUa----UUG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 140625 0.67 0.962829
Target:  5'- aGCGAcGGucUGGGUGGCggucGUGGUGGUGg -3'
miRNA:   3'- aUGCU-CCuuGCCUAUUG----CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 136121 0.67 0.966064
Target:  5'- gGgGAGGGugGGGggUAGgGCGGgaggcaGGCGg -3'
miRNA:   3'- aUgCUCCUugCCU--AUUgCGCCa-----CCGC- -5'
1764 5' -54.5 NC_001347.2 + 60661 0.67 0.969096
Target:  5'- gUGCGGGGGugACGcuguuaGUGGUGGCGg -3'
miRNA:   3'- -AUGCUCCU--UGCcuauugCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 68204 0.66 0.971654
Target:  5'- aGCGAGGAcacgcagACGGcgGAaGCGGUagacgcGGCGc -3'
miRNA:   3'- aUGCUCCU-------UGCCuaUUgCGCCA------CCGC- -5'
1764 5' -54.5 NC_001347.2 + 189 0.66 0.97457
Target:  5'- gGCGGGuGugccGGCGGGg--UGUGGUGGCGg -3'
miRNA:   3'- aUGCUC-C----UUGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 229668 0.66 0.97457
Target:  5'- gGCGGGuGugccGGCGGGg--UGUGGUGGCGg -3'
miRNA:   3'- aUGCUC-C----UUGCCUauuGCGCCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.