Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1764 | 5' | -54.5 | NC_001347.2 | + | 74878 | 0.68 | 0.938893 |
Target: 5'- ----cGGggUGGA---UGCGGUGGCGg -3' miRNA: 3'- augcuCCuuGCCUauuGCGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 80321 | 0.68 | 0.938893 |
Target: 5'- gAgGAGaGAACGGAaGAagaagaacaaGCGGUGGUGg -3' miRNA: 3'- aUgCUC-CUUGCCUaUUg---------CGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 184383 | 0.68 | 0.93412 |
Target: 5'- gUGCGGGGAcgACGGGcguUGCGG-GGCu -3' miRNA: 3'- -AUGCUCCU--UGCCUauuGCGCCaCCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 184732 | 0.68 | 0.93412 |
Target: 5'- gAUGAGG-ACGuGGcacaguuCGCGGUGGCGc -3' miRNA: 3'- aUGCUCCuUGC-CUauu----GCGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 76159 | 0.68 | 0.929116 |
Target: 5'- gUACGAGGGguuGCGGAUGGaGCuG-GGCGg -3' miRNA: 3'- -AUGCUCCU---UGCCUAUUgCGcCaCCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 150243 | 0.69 | 0.923883 |
Target: 5'- cUACGAGGc-CGGGgccaucGCGCGGcUGGCu -3' miRNA: 3'- -AUGCUCCuuGCCUau----UGCGCC-ACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 164898 | 0.69 | 0.91842 |
Target: 5'- cGCuGAGGGGgaGGAgGAgGCGGUGGCc -3' miRNA: 3'- aUG-CUCCUUg-CCUaUUgCGCCACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 13941 | 0.69 | 0.91842 |
Target: 5'- aACu-GGGGCGGGc-GCGgGGUGGCGa -3' miRNA: 3'- aUGcuCCUUGCCUauUGCgCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 39870 | 0.69 | 0.91842 |
Target: 5'- -uCGAGGGGCGGGgggguguuuuUAGCGgGGgGGUGa -3' miRNA: 3'- auGCUCCUUGCCU----------AUUGCgCCaCCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 66825 | 0.69 | 0.906204 |
Target: 5'- gACGAGGAAgaguuacUGGcagccGCgGCGGUGGCGa -3' miRNA: 3'- aUGCUCCUU-------GCCuau--UG-CGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 198117 | 0.69 | 0.900662 |
Target: 5'- cGCGuuGA--GGAUAgucGCGCGGUGGCa -3' miRNA: 3'- aUGCucCUugCCUAU---UGCGCCACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 200182 | 0.69 | 0.900035 |
Target: 5'- -gUGAGGAcaagaagACGGA--GCGUGGUGuGCGa -3' miRNA: 3'- auGCUCCU-------UGCCUauUGCGCCAC-CGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 1916 | 0.7 | 0.894293 |
Target: 5'- gGCGcuGGGCGcGGUGcugcccGCGCGGUGGCu -3' miRNA: 3'- aUGCucCUUGC-CUAU------UGCGCCACCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 142989 | 0.7 | 0.887703 |
Target: 5'- gGCgGAGGAGCcGGcGGCgGCGGUGGUGg -3' miRNA: 3'- aUG-CUCCUUGcCUaUUG-CGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 17317 | 0.7 | 0.887703 |
Target: 5'- --aGAGGAGgGGAaGACGCGGUuGCc -3' miRNA: 3'- augCUCCUUgCCUaUUGCGCCAcCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 135849 | 0.7 | 0.883645 |
Target: 5'- aGCGAGGGAucccgggccggagccCGGGgaggAGCGgGGUGGgGg -3' miRNA: 3'- aUGCUCCUU---------------GCCUa---UUGCgCCACCgC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 183457 | 0.7 | 0.880896 |
Target: 5'- -gUGAGGcGCGGAUAGCGCGccucGGCc -3' miRNA: 3'- auGCUCCuUGCCUAUUGCGCca--CCGc -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 82704 | 0.7 | 0.880896 |
Target: 5'- aACaGGGuguACGGGUgGugGCGGUGGUGc -3' miRNA: 3'- aUGcUCCu--UGCCUA-UugCGCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 182205 | 0.7 | 0.87671 |
Target: 5'- gUGCGGGuGGCGGGcugcgucgccuucggUGACGuCGGUGGUGg -3' miRNA: 3'- -AUGCUCcUUGCCU---------------AUUGC-GCCACCGC- -5' |
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1764 | 5' | -54.5 | NC_001347.2 | + | 75404 | 0.71 | 0.843774 |
Target: 5'- aGCG-GGAGCGGcgGcCGUGGcGGCGg -3' miRNA: 3'- aUGCuCCUUGCCuaUuGCGCCaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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