miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 5' -54.5 NC_001347.2 + 189 0.66 0.97457
Target:  5'- gGCGGGuGugccGGCGGGg--UGUGGUGGCGg -3'
miRNA:   3'- aUGCUC-C----UUGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 1916 0.7 0.894293
Target:  5'- gGCGcuGGGCGcGGUGcugcccGCGCGGUGGCu -3'
miRNA:   3'- aUGCucCUUGC-CUAU------UGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 5571 0.66 0.982203
Target:  5'- cGCGguGGGGGCGugccccgcagaccccGGuUAAUGCGGUGGUGg -3'
miRNA:   3'- aUGC--UCCUUGC---------------CU-AUUGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 13941 0.69 0.91842
Target:  5'- aACu-GGGGCGGGc-GCGgGGUGGCGa -3'
miRNA:   3'- aUGcuCCUUGCCUauUGCgCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 17317 0.7 0.887703
Target:  5'- --aGAGGAGgGGAaGACGCGGUuGCc -3'
miRNA:   3'- augCUCCUUgCCUaUUGCGCCAcCGc -5'
1764 5' -54.5 NC_001347.2 + 39870 0.69 0.91842
Target:  5'- -uCGAGGGGCGGGgggguguuuuUAGCGgGGgGGUGa -3'
miRNA:   3'- auGCUCCUUGCCU----------AUUGCgCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 44014 1.08 0.007895
Target:  5'- cUACGAGGAACGGAUAACGCGGUGGCGa -3'
miRNA:   3'- -AUGCUCCUUGCCUAUUGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 50994 0.66 0.983347
Target:  5'- uUACGAGGuaaucaacguAACaGGAU-ACGuUGGUGGCa -3'
miRNA:   3'- -AUGCUCC----------UUG-CCUAuUGC-GCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 57297 0.68 0.951854
Target:  5'- -cUGAGGAuaaGCGGGaGAUGUGGaUGGCu -3'
miRNA:   3'- auGCUCCU---UGCCUaUUGCGCC-ACCGc -5'
1764 5' -54.5 NC_001347.2 + 60661 0.67 0.969096
Target:  5'- gUGCGGGGGugACGcuguuaGUGGUGGCGg -3'
miRNA:   3'- -AUGCUCCU--UGCcuauugCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 66825 0.69 0.906204
Target:  5'- gACGAGGAAgaguuacUGGcagccGCgGCGGUGGCGa -3'
miRNA:   3'- aUGCUCCUU-------GCCuau--UG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 68204 0.66 0.971654
Target:  5'- aGCGAGGAcacgcagACGGcgGAaGCGGUagacgcGGCGc -3'
miRNA:   3'- aUGCUCCU-------UGCCuaUUgCGCCA------CCGC- -5'
1764 5' -54.5 NC_001347.2 + 74878 0.68 0.938893
Target:  5'- ----cGGggUGGA---UGCGGUGGCGg -3'
miRNA:   3'- augcuCCuuGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 75404 0.71 0.843774
Target:  5'- aGCG-GGAGCGGcgGcCGUGGcGGCGg -3'
miRNA:   3'- aUGCuCCUUGCCuaUuGCGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 76159 0.68 0.929116
Target:  5'- gUACGAGGGguuGCGGAUGGaGCuG-GGCGg -3'
miRNA:   3'- -AUGCUCCU---UGCCUAUUgCGcCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 80321 0.68 0.938893
Target:  5'- gAgGAGaGAACGGAaGAagaagaacaaGCGGUGGUGg -3'
miRNA:   3'- aUgCUC-CUUGCCUaUUg---------CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 82704 0.7 0.880896
Target:  5'- aACaGGGuguACGGGUgGugGCGGUGGUGc -3'
miRNA:   3'- aUGcUCCu--UGCCUA-UugCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 99180 0.67 0.962494
Target:  5'- gACGA-GAGCGcagccuucauauuGAUAACGCGGuUGGUGu -3'
miRNA:   3'- aUGCUcCUUGC-------------CUAUUGCGCC-ACCGC- -5'
1764 5' -54.5 NC_001347.2 + 106234 0.72 0.802049
Target:  5'- gACGAGGcGGCGGcgGugGCGuUGGCa -3'
miRNA:   3'- aUGCUCC-UUGCCuaUugCGCcACCGc -5'
1764 5' -54.5 NC_001347.2 + 135849 0.7 0.883645
Target:  5'- aGCGAGGGAucccgggccggagccCGGGgaggAGCGgGGUGGgGg -3'
miRNA:   3'- aUGCUCCUU---------------GCCUa---UUGCgCCACCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.