Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17640 | 5' | -54.1 | NC_004466.2 | + | 17583 | 0.67 | 0.642585 |
Target: 5'- aUCAGgaaCUCCAGGCUGGuaaguggaacACUGCUcuGGAu -3' miRNA: 3'- gAGUC---GAGGUCCGACUu---------UGGCGA--UCU- -5' |
|||||||
17640 | 5' | -54.1 | NC_004466.2 | + | 21414 | 0.67 | 0.630061 |
Target: 5'- -gCAGCUCUggaggcuaaagagAGGUUGGAAauGCUGGAg -3' miRNA: 3'- gaGUCGAGG-------------UCCGACUUUggCGAUCU- -5' |
|||||||
17640 | 5' | -54.1 | NC_004466.2 | + | 15885 | 0.69 | 0.529973 |
Target: 5'- uUCAGC-CUGGaGCUGAGcCCGUUGGGu -3' miRNA: 3'- gAGUCGaGGUC-CGACUUuGGCGAUCU- -5' |
|||||||
17640 | 5' | -54.1 | NC_004466.2 | + | 15824 | 1.09 | 0.000913 |
Target: 5'- gCUCAGCUCCAGGCUGAAACCGCUAGAc -3' miRNA: 3'- -GAGUCGAGGUCCGACUUUGGCGAUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home