miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17641 3' -55.3 NC_004466.2 + 24626 0.66 0.675665
Target:  5'- uGAGGUAGUUaggccauggCCCgAGGAAG-AAgUCCa -3'
miRNA:   3'- -CUCCAUCGA---------GGGgUCCUUCaUUgGGG- -5'
17641 3' -55.3 NC_004466.2 + 43498 0.66 0.675665
Target:  5'- cAGGUugauagccAGCacaUCCCCAGGAuu--GCCCUu -3'
miRNA:   3'- cUCCA--------UCG---AGGGGUCCUucauUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 28504 0.66 0.664527
Target:  5'- uGGGGUGGUgCCCUGGGGAuUAccuucGCCCa -3'
miRNA:   3'- -CUCCAUCGaGGGGUCCUUcAU-----UGGGg -5'
17641 3' -55.3 NC_004466.2 + 18239 0.66 0.653358
Target:  5'- -cGGUGGgaagaUCCCUc-GAAGUAAUCCCg -3'
miRNA:   3'- cuCCAUCg----AGGGGucCUUCAUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 14048 0.66 0.653358
Target:  5'- -cGGU-GCUCUCCA-GAAGUGGgCCUa -3'
miRNA:   3'- cuCCAuCGAGGGGUcCUUCAUUgGGG- -5'
17641 3' -55.3 NC_004466.2 + 15129 0.66 0.648884
Target:  5'- cAGGaGGC-CCCCAGGGAGccggucuguugucuUAugguguuACCCCu -3'
miRNA:   3'- cUCCaUCGaGGGGUCCUUC--------------AU-------UGGGG- -5'
17641 3' -55.3 NC_004466.2 + 14478 0.67 0.596306
Target:  5'- ----cGGCUCUCCucgggaaAGGAAGUGACUCUa -3'
miRNA:   3'- cuccaUCGAGGGG-------UCCUUCAUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 40249 0.67 0.586286
Target:  5'- uGAGGUaaaGGCgaguaagCCCCAGcauGUcGCCCCu -3'
miRNA:   3'- -CUCCA---UCGa------GGGGUCcuuCAuUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 28434 0.67 0.553155
Target:  5'- aAGGUAa-UCCCCAGGGcaccACCCCa -3'
miRNA:   3'- cUCCAUcgAGGGGUCCUucauUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 40354 0.68 0.542229
Target:  5'- gGAGGUAGagaaUCCaCAGGggGauuGCCaCCa -3'
miRNA:   3'- -CUCCAUCg---AGGgGUCCuuCau-UGG-GG- -5'
17641 3' -55.3 NC_004466.2 + 41720 0.68 0.520604
Target:  5'- cAGGaaGGC-CCCCAGGA----GCCCCg -3'
miRNA:   3'- cUCCa-UCGaGGGGUCCUucauUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 35218 0.68 0.509918
Target:  5'- gGGGGUAGCggCUCAGGuuGUGGCUgCCu -3'
miRNA:   3'- -CUCCAUCGagGGGUCCuuCAUUGG-GG- -5'
17641 3' -55.3 NC_004466.2 + 24921 0.68 0.499324
Target:  5'- uGAGGUAGa-CCUgGGGGA--AACCCCa -3'
miRNA:   3'- -CUCCAUCgaGGGgUCCUUcaUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 937 0.69 0.46816
Target:  5'- -cGGUAGCUCa--AGGGGuUGACCCCc -3'
miRNA:   3'- cuCCAUCGAGgggUCCUUcAUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 32370 0.69 0.438025
Target:  5'- gGAGGUAGCg-CCCuGGAGGcauauACCCa -3'
miRNA:   3'- -CUCCAUCGagGGGuCCUUCau---UGGGg -5'
17641 3' -55.3 NC_004466.2 + 42715 0.7 0.390382
Target:  5'- cGGGGUuuuGCa--CCAGGGAGUAcCCCCu -3'
miRNA:   3'- -CUCCAu--CGaggGGUCCUUCAUuGGGG- -5'
17641 3' -55.3 NC_004466.2 + 14206 0.71 0.346255
Target:  5'- uGGGUGGUgccUCCCUGGGAgcacucuucGGaGGCCCCg -3'
miRNA:   3'- cUCCAUCG---AGGGGUCCU---------UCaUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 16947 0.81 0.081173
Target:  5'- aAGG-AGCUugaCCCCgAGGGAGUAACCCCu -3'
miRNA:   3'- cUCCaUCGA---GGGG-UCCUUCAUUGGGG- -5'
17641 3' -55.3 NC_004466.2 + 1068 0.83 0.055394
Target:  5'- gGGGGUGGCcuaUCCCCAGG-GGUAuaGCCCCu -3'
miRNA:   3'- -CUCCAUCG---AGGGGUCCuUCAU--UGGGG- -5'
17641 3' -55.3 NC_004466.2 + 16472 1.13 0.000411
Target:  5'- aGAGGUAGCUCCCCAGGAAGUAACCCCg -3'
miRNA:   3'- -CUCCAUCGAGGGGUCCUUCAUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.