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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17643 | 5' | -51.6 | NC_004466.2 | + | 34861 | 0.66 | 0.851116 |
Target: 5'- -uGUCCUCGUgGGCCagGAAGUCGUaGGc -3' miRNA: 3'- guUAGGGGCAaCUGG--CUUCAGUA-CCa -5' |
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17643 | 5' | -51.6 | NC_004466.2 | + | 35683 | 0.66 | 0.851116 |
Target: 5'- gGAUCCCCGgaacucgaugGACCcGAAgGUCGUGa- -3' miRNA: 3'- gUUAGGGGCaa--------CUGG-CUU-CAGUACca -5' |
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17643 | 5' | -51.6 | NC_004466.2 | + | 21807 | 1.07 | 0.002599 |
Target: 5'- cCAAUCCCCGUUGACCGAAGUCAUGGUc -3' miRNA: 3'- -GUUAGGGGCAACUGGCUUCAGUACCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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