miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17644 3' -60.1 NC_004466.2 + 21536 0.66 0.414442
Target:  5'- cAUCuuGGGGGuaAACCCAUCGaCUAcUCCa -3'
miRNA:   3'- -UAGggCCUCC--UUGGGUGGC-GGUuGGG- -5'
17644 3' -60.1 NC_004466.2 + 48 0.66 0.387401
Target:  5'- uAUCCuCGGGGGucuucguAUCCACuCGCCccuACCUu -3'
miRNA:   3'- -UAGG-GCCUCCu------UGGGUG-GCGGu--UGGG- -5'
17644 3' -60.1 NC_004466.2 + 41405 0.67 0.361548
Target:  5'- gAUCaggcaGGAuGuGAACCCguagACCGCCAAUCCg -3'
miRNA:   3'- -UAGgg---CCU-C-CUUGGG----UGGCGGUUGGG- -5'
17644 3' -60.1 NC_004466.2 + 36654 0.67 0.340132
Target:  5'- cGUCCCaGGAGaacGAACCCAucgaaccggguaucgUCGCCAucuuccucgguGCCCu -3'
miRNA:   3'- -UAGGG-CCUC---CUUGGGU---------------GGCGGU-----------UGGG- -5'
17644 3' -60.1 NC_004466.2 + 14845 0.67 0.336919
Target:  5'- -cCCUGGA-GAACCCAgagcguuggucCCGUgCAGCCCa -3'
miRNA:   3'- uaGGGCCUcCUUGGGU-----------GGCG-GUUGGG- -5'
17644 3' -60.1 NC_004466.2 + 9951 0.69 0.263821
Target:  5'- --aCC-GAGGAACCUACCGUCAcuACCg -3'
miRNA:   3'- uagGGcCUCCUUGGGUGGCGGU--UGGg -5'
17644 3' -60.1 NC_004466.2 + 16495 0.71 0.193697
Target:  5'- -cCCCGGAGGuuguACCUgaaGCUGCCccaGACCUg -3'
miRNA:   3'- uaGGGCCUCCu---UGGG---UGGCGG---UUGGG- -5'
17644 3' -60.1 NC_004466.2 + 13627 0.71 0.193697
Target:  5'- aAUCUCGGGGGAGCCCuCCaGUCucuCCUg -3'
miRNA:   3'- -UAGGGCCUCCUUGGGuGG-CGGuu-GGG- -5'
17644 3' -60.1 NC_004466.2 + 38273 0.72 0.156509
Target:  5'- -gCCCGGAGG-ACCCAUCaUCAauGCCCu -3'
miRNA:   3'- uaGGGCCUCCuUGGGUGGcGGU--UGGG- -5'
17644 3' -60.1 NC_004466.2 + 2530 0.76 0.092813
Target:  5'- cGUCCCGGAGaggauGGACCCAUCaccCUAGCCCg -3'
miRNA:   3'- -UAGGGCCUC-----CUUGGGUGGc--GGUUGGG- -5'
17644 3' -60.1 NC_004466.2 + 23684 1.1 0.000236
Target:  5'- aAUCCCGGAGGAACCCACCGCCAACCCg -3'
miRNA:   3'- -UAGGGCCUCCUUGGGUGGCGGUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.