Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 42248 | 0.66 | 0.844871 |
|
Target: 5'- --cUGGUAUCGCCGGaugacaACCuUGGAUa -3' miRNA: 3'- aaaACCGUAGUGGUCg-----UGGcAUCUAc -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 41698 | 0.66 | 0.835509 |
|
Target: 5'- --gUGGUGagcucggauUCACCcuGGCAgCCGUAGGUGu -3' miRNA: 3'- aaaACCGU---------AGUGG--UCGU-GGCAUCUAC- -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 42188 | 0.67 | 0.79574 |
|
Target: 5'- -aUUGGC-UgGCUAGCGCCGauGGUGa -3' miRNA: 3'- aaAACCGuAgUGGUCGUGGCauCUAC- -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 37469 | 0.67 | 0.785278 |
|
Target: 5'- ---cGGCAUCACCAGCguacugaacAUCGgucgGGAg- -3' miRNA: 3'- aaaaCCGUAGUGGUCG---------UGGCa---UCUac -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 34785 | 0.73 | 0.445625 |
|
Target: 5'- --aUGGU-UCACaauGGCACCGUGGAUGc -3' miRNA: 3'- aaaACCGuAGUGg--UCGUGGCAUCUAC- -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 37050 | 0.74 | 0.395174 |
|
Target: 5'- ---cGGCAggCACCGGCcuuACCGUAGAg- -3' miRNA: 3'- aaaaCCGUa-GUGGUCG---UGGCAUCUac -5' |
|||||||
| 17647 | 5' | -51 | NC_004466.2 | + | 26480 | 1.07 | 0.002198 |
|
Target: 5'- aUUUUGGCAUCACCAGCACCGUAGAUGa -3' miRNA: 3'- -AAAACCGUAGUGGUCGUGGCAUCUAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home