Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17651 | 5' | -55.7 | NC_004466.2 | + | 32751 | 1.11 | 0.000516 |
Target: 5'- cUGCAUCCCGAGUAGACACCAGCAGGGa -3' miRNA: 3'- -ACGUAGGGCUCAUCUGUGGUCGUCCC- -5' |
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17651 | 5' | -55.7 | NC_004466.2 | + | 44317 | 0.73 | 0.26497 |
Target: 5'- -cCAUCCaggGAGUAGACACC-GCAGGc -3' miRNA: 3'- acGUAGGg--CUCAUCUGUGGuCGUCCc -5' |
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17651 | 5' | -55.7 | NC_004466.2 | + | 35205 | 0.69 | 0.4312 |
Target: 5'- uUGCAUCCUGAuaacccAUACCAcGCAGGGc -3' miRNA: 3'- -ACGUAGGGCUcauc--UGUGGU-CGUCCC- -5' |
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17651 | 5' | -55.7 | NC_004466.2 | + | 14274 | 0.67 | 0.577795 |
Target: 5'- gUGC-UCCCaGGG-AGGCACCAccCAGGGc -3' miRNA: 3'- -ACGuAGGG-CUCaUCUGUGGUc-GUCCC- -5' |
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17651 | 5' | -55.7 | NC_004466.2 | + | 20951 | 0.66 | 0.622181 |
Target: 5'- gGCGUCCUuaGGGUuucgaAGAuUACCGGgAGGGu -3' miRNA: 3'- aCGUAGGG--CUCA-----UCU-GUGGUCgUCCC- -5' |
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17651 | 5' | -55.7 | NC_004466.2 | + | 6202 | 0.66 | 0.644466 |
Target: 5'- gGCGUCCgauUGGGcacguUGGGCAUCAGCuuGGGc -3' miRNA: 3'- aCGUAGG---GCUC-----AUCUGUGGUCGu-CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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