Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17652 | 3' | -56.2 | NC_004466.2 | + | 33037 | 1.13 | 0.000406 |
Target: 5'- cCCUGACGGCCACGGUAGGUCGAACCCu -3' miRNA: 3'- -GGACUGCCGGUGCCAUCCAGCUUGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 40722 | 0.67 | 0.62112 |
Target: 5'- cCCaGGCGGCUgaggauGCGGUcGG-CG-ACCCg -3' miRNA: 3'- -GGaCUGCCGG------UGCCAuCCaGCuUGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 41580 | 0.68 | 0.514234 |
Target: 5'- cCCUGGCGuGCCGCaGGUAagccgaucGGcUCGAcUCCa -3' miRNA: 3'- -GGACUGC-CGGUG-CCAU--------CC-AGCUuGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 12362 | 0.71 | 0.35383 |
Target: 5'- gCUGAUGGCUAuUGGgGGGUCuccaugGAGCCCc -3' miRNA: 3'- gGACUGCCGGU-GCCaUCCAG------CUUGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 9173 | 0.72 | 0.345553 |
Target: 5'- cCCUGAUGGCCuuUGGUggAGGcaUCGAGauCCCu -3' miRNA: 3'- -GGACUGCCGGu-GCCA--UCC--AGCUU--GGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 41660 | 0.72 | 0.345553 |
Target: 5'- uCCUGGgGGCCuuccugACGGgucauGUUGAACCCa -3' miRNA: 3'- -GGACUgCCGG------UGCCauc--CAGCUUGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 42362 | 0.76 | 0.183223 |
Target: 5'- cCUUGAUGGUCACGG--GGUaGAACCCg -3' miRNA: 3'- -GGACUGCCGGUGCCauCCAgCUUGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 36190 | 0.72 | 0.32942 |
Target: 5'- -aUGAgUGGCCACGGaucgaUGGGUgGAACCg -3' miRNA: 3'- ggACU-GCCGGUGCC-----AUCCAgCUUGGg -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 39109 | 0.71 | 0.3708 |
Target: 5'- aCCUGAUGGCCAa--UGGGUauacCGAgcACCCa -3' miRNA: 3'- -GGACUGCCGGUgccAUCCA----GCU--UGGG- -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 41680 | 0.7 | 0.415589 |
Target: 5'- cCCUGGCaGCCguaGGUguGGaGUCGAGCCg -3' miRNA: 3'- -GGACUGcCGGug-CCA--UC-CAGCUUGGg -5' |
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17652 | 3' | -56.2 | NC_004466.2 | + | 1753 | 0.7 | 0.43441 |
Target: 5'- gCCauaAUGGCUgggACGGUAGGgcUCGAACCUa -3' miRNA: 3'- -GGac-UGCCGG---UGCCAUCC--AGCUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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