miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17654	3'	-50	NC_004466.2	+	40767	0.68	0.820823
	Target:  5'- aGGGAGaaGACCaUGAGGGccucgccGUCGUUg -3' miRNA:   3'- aCCCUUagUUGGaACUCCCa------UAGCAA- -5'
17654	3'	-50	NC_004466.2	+	27501	0.68	0.800747
	Target:  5'- gGGGAcugccucuagGUCAAUCUUGAGGau-UCGUUc -3' miRNA:   3'- aCCCU----------UAGUUGGAACUCCcauAGCAA- -5'
17654	3'	-50	NC_004466.2	+	4332	0.69	0.769163
	Target:  5'- aGGG-AUCAACCUUGc-GGUAUCa-- -3' miRNA:   3'- aCCCuUAGUUGGAACucCCAUAGcaa -5'
17654	3'	-50	NC_004466.2	+	37841	0.69	0.747284
	Target:  5'- cGaGGAAcUCGGCCUUGAGGGguaCGa- -3' miRNA:   3'- aC-CCUU-AGUUGGAACUCCCauaGCaa -5'
17654	3'	-50	NC_004466.2	+	34759	0.7	0.690507
	Target:  5'- cUGGGGuAUCGAUCUgcugGAGGGUAaCGa- -3' miRNA:   3'- -ACCCU-UAGUUGGAa---CUCCCAUaGCaa -5'
17654	3'	-50	NC_004466.2	+	36946	0.71	0.643852
	Target:  5'- -cGGAGUaAGCCUUGAGGGccgaGUCGUa -3' miRNA:   3'- acCCUUAgUUGGAACUCCCa---UAGCAa -5'
17654	3'	-50	NC_004466.2	+	31262	0.74	0.494461
	Target:  5'- cGGGAGUCGaggGCCUUGAagGGGUAUUc-- -3' miRNA:   3'- aCCCUUAGU---UGGAACU--CCCAUAGcaa -5'
17654	3'	-50	NC_004466.2	+	34664	1.07	0.003319
	Target:  5'- aUGGGAAUCAACCUUGAGGGUAUCGUUa -3' miRNA:   3'- -ACCCUUAGUUGGAACUCCCAUAGCAA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home