Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17654 | 5' | -55.7 | NC_004466.2 | + | 34700 | 1.08 | 0.000845 |
Target: 5'- cAGAUCGAUACCCCAGGCAUCCACGGUg -3' miRNA: 3'- -UCUAGCUAUGGGGUCCGUAGGUGCCA- -5' |
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17654 | 5' | -55.7 | NC_004466.2 | + | 34924 | 0.7 | 0.398187 |
Target: 5'- uGAUCGGUcgaccuuggccaaACCCguGGCAUgagcaCCACGGa -3' miRNA: 3'- uCUAGCUA-------------UGGGguCCGUA-----GGUGCCa -5' |
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17654 | 5' | -55.7 | NC_004466.2 | + | 8075 | 0.69 | 0.467332 |
Target: 5'- uGGUCGGUGCCCCucAGGCuaagGUCCAgCGu- -3' miRNA: 3'- uCUAGCUAUGGGG--UCCG----UAGGU-GCca -5' |
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17654 | 5' | -55.7 | NC_004466.2 | + | 37996 | 0.68 | 0.519545 |
Target: 5'- uGGggUGAUuauguacaaGCCCCAGaGCuucUCCACGGg -3' miRNA: 3'- -UCuaGCUA---------UGGGGUC-CGu--AGGUGCCa -5' |
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17654 | 5' | -55.7 | NC_004466.2 | + | 36542 | 0.67 | 0.573901 |
Target: 5'- aAGGUCuggACCCCAGGaauuCAUCCugaACGGg -3' miRNA: 3'- -UCUAGcuaUGGGGUCC----GUAGG---UGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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