Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17656 | 5' | -51.5 | NC_004466.2 | + | 35792 | 1.12 | 0.00148 |
Target: 5'- gCCAAGAGACGACGACCGAAGGCUUGAg -3' miRNA: 3'- -GGUUCUCUGCUGCUGGCUUCCGAACU- -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 38046 | 0.75 | 0.40123 |
Target: 5'- aCCugacGGAGACGAUGGCC-AAGGCUuUGGg -3' miRNA: 3'- -GGu---UCUCUGCUGCUGGcUUCCGA-ACU- -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 37351 | 0.69 | 0.703009 |
Target: 5'- aCAGGuugucGAUGACuuccaGGCCGAAaGGCUUGAu -3' miRNA: 3'- gGUUCu----CUGCUG-----CUGGCUU-CCGAACU- -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 33137 | 0.68 | 0.778181 |
Target: 5'- gCCcuGGGugGACGAauccuucguuCCGAGGGUUcGAc -3' miRNA: 3'- -GGuuCUCugCUGCU----------GGCUUCCGAaCU- -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 4007 | 0.68 | 0.798404 |
Target: 5'- uUCAGGAGgucuacgaaGCGACGACCuGAGGUa--- -3' miRNA: 3'- -GGUUCUC---------UGCUGCUGGcUUCCGaacu -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 38979 | 0.66 | 0.854309 |
Target: 5'- -gAGGAGucuuuCGACGGCCucGGGCUUc- -3' miRNA: 3'- ggUUCUCu----GCUGCUGGcuUCCGAAcu -5' |
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17656 | 5' | -51.5 | NC_004466.2 | + | 31140 | 0.66 | 0.871078 |
Target: 5'- cCCAGGGGugGGguCGAuCCGuucGGcCUUGAg -3' miRNA: 3'- -GGUUCUCugCU--GCU-GGCuu-CC-GAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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