miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17658 3' -51.3 NC_004466.2 + 40770 0.66 0.843815
Target:  5'- cUGGg-GAGUaccagcaaccccugGGCCAGCAgcgacaaccacgAUACCCUCg -3'
miRNA:   3'- -ACCaaCUCAa-------------UCGGUCGU------------UAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 37783 0.66 0.839227
Target:  5'- aGGccGAGUuccucgaUAGcCCGGCAguccuugguAUACCCCUg -3'
miRNA:   3'- aCCaaCUCA-------AUC-GGUCGU---------UAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 19891 0.67 0.7913
Target:  5'- aUGGUUGA---GGCCccuuGCGGUACUgCCu -3'
miRNA:   3'- -ACCAACUcaaUCGGu---CGUUAUGGgGG- -5'
17658 3' -51.3 NC_004466.2 + 7494 0.67 0.780932
Target:  5'- -aGUUGGcg-GGCauCAGCAAUACCCCg -3'
miRNA:   3'- acCAACUcaaUCG--GUCGUUAUGGGGg -5'
17658 3' -51.3 NC_004466.2 + 9182 0.68 0.759698
Target:  5'- cGGUUGAGacGGUCAGUAGUGUUgCCa -3'
miRNA:   3'- aCCAACUCaaUCGGUCGUUAUGGgGG- -5'
17658 3' -51.3 NC_004466.2 + 42711 0.69 0.681536
Target:  5'- gGGUcgGGGUUuuGCaccaGGgAGUACCCCCu -3'
miRNA:   3'- aCCAa-CUCAAu-CGg---UCgUUAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 19920 0.69 0.658541
Target:  5'- cGGUagUGAGUU--CCGGguAgACCCCCg -3'
miRNA:   3'- aCCA--ACUCAAucGGUCguUaUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 43254 0.7 0.623875
Target:  5'- cGG-UGAGacGGCCAGCAugaGCCUCUa -3'
miRNA:   3'- aCCaACUCaaUCGGUCGUua-UGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 3515 0.7 0.600784
Target:  5'- gGGUaaaGGUUAGaUAGaCAAUACCCCCa -3'
miRNA:   3'- aCCAac-UCAAUCgGUC-GUUAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 39498 0.71 0.543747
Target:  5'- cGGUUG-GUUcuacauccaAGCUcGCcGUACCCCCa -3'
miRNA:   3'- aCCAACuCAA---------UCGGuCGuUAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 18846 0.71 0.542621
Target:  5'- gGGUgugaacgUGAG-UAGCCaAGCGgAUGCCCUCa -3'
miRNA:   3'- aCCA-------ACUCaAUCGG-UCGU-UAUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 43499 0.78 0.236245
Target:  5'- aGGUUGA--UAGCCAGCAc-AUCCCCa -3'
miRNA:   3'- aCCAACUcaAUCGGUCGUuaUGGGGG- -5'
17658 3' -51.3 NC_004466.2 + 33171 0.79 0.200034
Target:  5'- aGGUU-AGUgaAGCCAGCAAUAgCCCCu -3'
miRNA:   3'- aCCAAcUCAa-UCGGUCGUUAUgGGGG- -5'
17658 3' -51.3 NC_004466.2 + 39569 1.14 0.000856
Target:  5'- uUGGUUGAGUUAGCCAGCAAUACCCCCa -3'
miRNA:   3'- -ACCAACUCAAUCGGUCGUUAUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.