Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17658 | 5' | -51 | NC_004466.2 | + | 39604 | 1.08 | 0.002122 |
Target: 5'- cCUAGGGGCAUUACUAACGCCCUCUUAg -3' miRNA: 3'- -GAUCCCCGUAAUGAUUGCGGGAGAAU- -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 14281 | 0.66 | 0.825508 |
Target: 5'- uUGGGGGUcuGUUGuuCUAAUGgCCUCUUu -3' miRNA: 3'- gAUCCCCG--UAAU--GAUUGCgGGAGAAu -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 32172 | 0.67 | 0.795457 |
Target: 5'- -gAGGuGGCAUgcccgACgaaucgGGCGCCCUCc-- -3' miRNA: 3'- gaUCC-CCGUAa----UGa-----UUGCGGGAGaau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 14163 | 0.67 | 0.795457 |
Target: 5'- uCUGGGGGCggUGgUggUGgCCUCg-- -3' miRNA: 3'- -GAUCCCCGuaAUgAuuGCgGGAGaau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 32971 | 0.68 | 0.763674 |
Target: 5'- aUGGGGGCAagGCgacggaGACGUucagCCUCUUGg -3' miRNA: 3'- gAUCCCCGUaaUGa-----UUGCG----GGAGAAU- -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 33251 | 0.71 | 0.545359 |
Target: 5'- -cAGGGGCuAUUACUAACGCacuaCCUUa-- -3' miRNA: 3'- gaUCCCCG-UAAUGAUUGCG----GGAGaau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 7424 | 0.77 | 0.26902 |
Target: 5'- --cGGGGUAUUGCUGAUGCCCg---- -3' miRNA: 3'- gauCCCCGUAAUGAUUGCGGGagaau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 15188 | 0.74 | 0.416166 |
Target: 5'- cCUGGGGGCcuc-CUGugGCCUUCUg- -3' miRNA: 3'- -GAUCCCCGuaauGAUugCGGGAGAau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 39642 | 0.7 | 0.614802 |
Target: 5'- cCUGGGGGUAUUGCUGGCuaaCUCa-- -3' miRNA: 3'- -GAUCCCCGUAAUGAUUGcggGAGaau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 39673 | 0.69 | 0.661569 |
Target: 5'- -aAGaGGGCGUUAgUAAUGCCC-CUa- -3' miRNA: 3'- gaUC-CCCGUAAUgAUUGCGGGaGAau -5' |
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17658 | 5' | -51 | NC_004466.2 | + | 44605 | 0.67 | 0.785038 |
Target: 5'- -cAGGGGUGUgUACUAugacGCGCCC-CUg- -3' miRNA: 3'- gaUCCCCGUA-AUGAU----UGCGGGaGAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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