miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1766 3' -58 NC_001347.2 + 140651 0.67 0.898834
Target:  5'- uGGuGGGGGUgg---UGGGGAuucCGGGGGa -3'
miRNA:   3'- -CC-CCUCCAaugcaACCCCU---GCCCCUg -5'
1766 3' -58 NC_001347.2 + 164904 0.67 0.891969
Target:  5'- gGGGGAGGaggagGCGguggccaguguuUUGGacgucguGGACGGGGGu -3'
miRNA:   3'- -CCCCUCCaa---UGC------------AACC-------CCUGCCCCUg -5'
1766 3' -58 NC_001347.2 + 136729 0.67 0.872691
Target:  5'- gGGGGGGGUga----GGGGGgGGGGuuACg -3'
miRNA:   3'- -CCCCUCCAaugcaaCCCCUgCCCC--UG- -5'
1766 3' -58 NC_001347.2 + 144216 0.67 0.865659
Target:  5'- cGGGGAGG--ACG-UGGaGGAcaucuucgugcuCGGGGAa -3'
miRNA:   3'- -CCCCUCCaaUGCaACC-CCU------------GCCCCUg -5'
1766 3' -58 NC_001347.2 + 155601 0.68 0.85028
Target:  5'- gGGGGAGGUggugACGacGaGGACGGugaagacGGACa -3'
miRNA:   3'- -CCCCUCCAa---UGCaaCcCCUGCC-------CCUG- -5'
1766 3' -58 NC_001347.2 + 84320 0.68 0.841135
Target:  5'- -aGGAGGcgGCGggcuuuuuugucccgGGGGugGGuGGACg -3'
miRNA:   3'- ccCCUCCaaUGCaa-------------CCCCugCC-CCUG- -5'
1766 3' -58 NC_001347.2 + 1960 0.68 0.835686
Target:  5'- cGGGGccGGcgACGggGacGGcGGCGGGGACg -3'
miRNA:   3'- -CCCCu-CCaaUGCaaC--CC-CUGCCCCUG- -5'
1766 3' -58 NC_001347.2 + 223777 0.69 0.811433
Target:  5'- cGGGuGGGUUguucggaaACGgc-GGGACGGGGAa -3'
miRNA:   3'- -CCCcUCCAA--------UGCaacCCCUGCCCCUg -5'
1766 3' -58 NC_001347.2 + 203834 0.69 0.78586
Target:  5'- uGGGGAGGU--CG-UGGaGGcaGCGGGGGu -3'
miRNA:   3'- -CCCCUCCAauGCaACC-CC--UGCCCCUg -5'
1766 3' -58 NC_001347.2 + 135873 0.69 0.777076
Target:  5'- cGGGGAGGa-GCGgggUGGGGGUGGGa-- -3'
miRNA:   3'- -CCCCUCCaaUGCa--ACCCCUGCCCcug -5'
1766 3' -58 NC_001347.2 + 136120 0.7 0.731557
Target:  5'- cGGGGAGGg--UGggGGguaGGGCGGGaGGCa -3'
miRNA:   3'- -CCCCUCCaauGCaaCC---CCUGCCC-CUG- -5'
1766 3' -58 NC_001347.2 + 142581 0.7 0.722188
Target:  5'- cGGGAGca-GCGggGGcGGCGGGGGCa -3'
miRNA:   3'- cCCCUCcaaUGCaaCCcCUGCCCCUG- -5'
1766 3' -58 NC_001347.2 + 40100 0.71 0.693694
Target:  5'- gGGGcGAGGgacgACGgcccUGGGGACcgcgGGGGAa -3'
miRNA:   3'- -CCC-CUCCaa--UGCa---ACCCCUG----CCCCUg -5'
1766 3' -58 NC_001347.2 + 135980 0.73 0.596815
Target:  5'- uGGGGGGGUcgaGCGg-GGGGA-GGGGAg -3'
miRNA:   3'- -CCCCUCCAa--UGCaaCCCCUgCCCCUg -5'
1766 3' -58 NC_001347.2 + 39895 0.75 0.457217
Target:  5'- cGGGGGGGUgaaacuuggaguUGCGUUGuGGACGGcGACu -3'
miRNA:   3'- -CCCCUCCA------------AUGCAACcCCUGCCcCUG- -5'
1766 3' -58 NC_001347.2 + 40678 0.76 0.4229
Target:  5'- -cGGGGGUUGCGcUGGGGcCGGGG-Cu -3'
miRNA:   3'- ccCCUCCAAUGCaACCCCuGCCCCuG- -5'
1766 3' -58 NC_001347.2 + 144496 0.77 0.359153
Target:  5'- cGGGAGGcgAUGUcGGGGACGGGuACg -3'
miRNA:   3'- cCCCUCCaaUGCAaCCCCUGCCCcUG- -5'
1766 3' -58 NC_001347.2 + 40644 0.8 0.25868
Target:  5'- cGGGGGGUgUGCGggacggugUUGGGGcCGGGGACg -3'
miRNA:   3'- cCCCUCCA-AUGC--------AACCCCuGCCCCUG- -5'
1766 3' -58 NC_001347.2 + 84431 0.8 0.25287
Target:  5'- cGGGGGGG--ACc--GGGGGCGGGGACa -3'
miRNA:   3'- -CCCCUCCaaUGcaaCCCCUGCCCCUG- -5'
1766 3' -58 NC_001347.2 + 40716 1.12 0.002191
Target:  5'- aGGGGAGGUUACGUUGGGGACGGGGACa -3'
miRNA:   3'- -CCCCUCCAAUGCAACCCCUGCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.