Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17665 | 5' | -53.7 | NC_004466.2 | + | 44513 | 1.1 | 0.000982 |
Target: 5'- cCAUGCACUCUAGGGAUAGACCAGGGGc -3' miRNA: 3'- -GUACGUGAGAUCCCUAUCUGGUCCCC- -5' |
|||||||
17665 | 5' | -53.7 | NC_004466.2 | + | 938 | 0.8 | 0.125606 |
Target: 5'- --gGUAUUCaGGGGGUGGAUCGGGGGg -3' miRNA: 3'- guaCGUGAGaUCCCUAUCUGGUCCCC- -5' |
|||||||
17665 | 5' | -53.7 | NC_004466.2 | + | 974 | 0.74 | 0.30929 |
Target: 5'- --gGUAUcCUAGGGAgGGGCUAGGGGc -3' miRNA: 3'- guaCGUGaGAUCCCUaUCUGGUCCCC- -5' |
|||||||
17665 | 5' | -53.7 | NC_004466.2 | + | 996 | 0.72 | 0.365319 |
Target: 5'- --nGCAUacccCUGGGGAUAGGCCAcccccacuuuaucuGGGGg -3' miRNA: 3'- guaCGUGa---GAUCCCUAUCUGGU--------------CCCC- -5' |
|||||||
17665 | 5' | -53.7 | NC_004466.2 | + | 44551 | 0.67 | 0.650751 |
Target: 5'- cCGUGCAUUgUAGcGAUAGACCAucaGGaGGu -3' miRNA: 3'- -GUACGUGAgAUCcCUAUCUGGU---CC-CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home