miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1767 3' -49.6 NC_001347.2 + 6281 0.66 0.999461
Target:  5'- -cCGgAGGAAGAGGccGAGGAacccGAGGAAUa -3'
miRNA:   3'- guGUgUUCUUCUUC--CUCCU----CUCCUUG- -5'
1767 3' -49.6 NC_001347.2 + 202321 0.66 0.999182
Target:  5'- uUugACGGGGcu-GGGuGGAGAGGGAa -3'
miRNA:   3'- -GugUGUUCUucuUCCuCCUCUCCUUg -5'
1767 3' -49.6 NC_001347.2 + 40079 0.66 0.999182
Target:  5'- aCACACGAaAAGcaacgcccGGGGGcGAGGGACg -3'
miRNA:   3'- -GUGUGUUcUUCuu------CCUCCuCUCCUUG- -5'
1767 3' -49.6 NC_001347.2 + 73698 0.66 0.999182
Target:  5'- gCACGCGAGAAGggGccGGGGuccGcGGGCa -3'
miRNA:   3'- -GUGUGUUCUUCuuCcuCCUCu--C-CUUG- -5'
1767 3' -49.6 NC_001347.2 + 173832 0.66 0.999182
Target:  5'- gGCgGCGGcGGAGGAGGAGGAGGcggcgguuuGGAucGCa -3'
miRNA:   3'- gUG-UGUU-CUUCUUCCUCCUCU---------CCU--UG- -5'
1767 3' -49.6 NC_001347.2 + 177005 0.66 0.999182
Target:  5'- gUAC-CAGGGAGGAGGGGuuaAGAGGucACa -3'
miRNA:   3'- -GUGuGUUCUUCUUCCUCc--UCUCCu-UG- -5'
1767 3' -49.6 NC_001347.2 + 135224 0.66 0.999001
Target:  5'- gGCugGgcggccgauGGggGGAGGGGaGuGGGGGACc -3'
miRNA:   3'- gUGugU---------UCuuCUUCCUC-CuCUCCUUG- -5'
1767 3' -49.6 NC_001347.2 + 135869 0.66 0.999001
Target:  5'- aGCcCGGGGAGGAGcGGGGuGGGGGu- -3'
miRNA:   3'- gUGuGUUCUUCUUC-CUCCuCUCCUug -5'
1767 3' -49.6 NC_001347.2 + 67920 0.67 0.998877
Target:  5'- gACGCGAGGAGGgccGGGAcucaccgucguucucGGAGgAGGGAg -3'
miRNA:   3'- gUGUGUUCUUCU---UCCU---------------CCUC-UCCUUg -5'
1767 3' -49.6 NC_001347.2 + 152009 0.67 0.998787
Target:  5'- aGCAaCAGGA--GAGGAGGAGAGccGGCa -3'
miRNA:   3'- gUGU-GUUCUucUUCCUCCUCUCc-UUG- -5'
1767 3' -49.6 NC_001347.2 + 156749 0.67 0.998715
Target:  5'- aCGCugAuGAAGAggAGGAGGAGuugcuggcucuggcGGGAGa -3'
miRNA:   3'- -GUGugUuCUUCU--UCCUCCUC--------------UCCUUg -5'
1767 3' -49.6 NC_001347.2 + 144605 0.67 0.998534
Target:  5'- gAgGCAAGAaaguGGuAGGGGGAGGGGu-- -3'
miRNA:   3'- gUgUGUUCU----UCuUCCUCCUCUCCuug -5'
1767 3' -49.6 NC_001347.2 + 195320 0.67 0.998239
Target:  5'- gGCACGGGGGcgucguGAAGGAGGAGAc---- -3'
miRNA:   3'- gUGUGUUCUU------CUUCCUCCUCUccuug -5'
1767 3' -49.6 NC_001347.2 + 222937 0.68 0.997036
Target:  5'- gGCucuCGucucGGggGAccacAGGGGGAGGGGggUa -3'
miRNA:   3'- gUGu--GU----UCuuCU----UCCUCCUCUCCuuG- -5'
1767 3' -49.6 NC_001347.2 + 144014 0.68 0.995221
Target:  5'- aCAUcCAGGAGGcgGAGGAGGcgcuGAGGGAg -3'
miRNA:   3'- -GUGuGUUCUUC--UUCCUCCu---CUCCUUg -5'
1767 3' -49.6 NC_001347.2 + 47556 0.68 0.995221
Target:  5'- uCACAugucCAGGAGGucGG-GGAGAGGGc- -3'
miRNA:   3'- -GUGU----GUUCUUCuuCCuCCUCUCCUug -5'
1767 3' -49.6 NC_001347.2 + 90628 0.69 0.991494
Target:  5'- gGCAguUGAGggGGAGGAGacggggaaacuGAGAGGAGa -3'
miRNA:   3'- gUGU--GUUCuuCUUCCUC-----------CUCUCCUUg -5'
1767 3' -49.6 NC_001347.2 + 58111 0.69 0.991377
Target:  5'- --gAUGAGGaagAGGAGGAGGgugcucaGGAGGAGCg -3'
miRNA:   3'- gugUGUUCU---UCUUCCUCC-------UCUCCUUG- -5'
1767 3' -49.6 NC_001347.2 + 78162 0.69 0.988918
Target:  5'- --uGCAAGAAGcuGGuGGAGAugauGGAGCa -3'
miRNA:   3'- gugUGUUCUUCuuCCuCCUCU----CCUUG- -5'
1767 3' -49.6 NC_001347.2 + 177670 0.69 0.988918
Target:  5'- aCACagaGCGGGAGGAcacggAGGAGGAaAGGGAg -3'
miRNA:   3'- -GUG---UGUUCUUCU-----UCCUCCUcUCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.