Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1769 | 5' | -59.8 | NC_001347.2 | + | 119551 | 0.68 | 0.748639 |
Target: 5'- uGgGUCaGCAGC-CCACCacCGUGCCa -3' miRNA: 3'- -CgCAGaCGUCGcGGUGGcaGCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 116651 | 0.68 | 0.748639 |
Target: 5'- uGCugagCUGCaugagcacGGCGCCGCCGcCGUcGCCa -3' miRNA: 3'- -CGca--GACG--------UCGCGGUGGCaGCA-CGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 14282 | 0.68 | 0.766669 |
Target: 5'- gGCG-CUGCAGUuauGCCGCCGgagcuccccgCGcUGCCu -3' miRNA: 3'- -CGCaGACGUCG---CGGUGGCa---------GC-ACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 142432 | 0.68 | 0.766669 |
Target: 5'- gGCGUCggcGCGGCGuCCGgCGUCGggggugGCgGu -3' miRNA: 3'- -CGCAGa--CGUCGC-GGUgGCAGCa-----CGgC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 88206 | 0.68 | 0.752276 |
Target: 5'- uGCGUCcaccGCGGaCGCCGCUcacgcuguccgagggGUCGcUGCCGc -3' miRNA: 3'- -CGCAGa---CGUC-GCGGUGG---------------CAGC-ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 82307 | 0.68 | 0.766669 |
Target: 5'- cGCGUUcGaCAGCGCUGCgGUUuccacgcccaGUGCCGg -3' miRNA: 3'- -CGCAGaC-GUCGCGGUGgCAG----------CACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 38385 | 0.68 | 0.775528 |
Target: 5'- cGCGUCcccGcCGGCgGCCuCCGUCuccGUGCCGc -3' miRNA: 3'- -CGCAGa--C-GUCG-CGGuGGCAG---CACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 210135 | 0.68 | 0.775528 |
Target: 5'- aGCGUUa-UAGCGCCGuCUuUCGUGCCGu -3' miRNA: 3'- -CGCAGacGUCGCGGU-GGcAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 193275 | 0.68 | 0.775528 |
Target: 5'- gGCGUUacuUGCGGCGCUucgaggGCuCGUgCGUGUCGc -3' miRNA: 3'- -CGCAG---ACGUCGCGG------UG-GCA-GCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 191800 | 0.69 | 0.683072 |
Target: 5'- gGCGcUCUGCcaguuGGCGagggaUACCGUCGUGCg- -3' miRNA: 3'- -CGC-AGACG-----UCGCg----GUGGCAGCACGgc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 159448 | 0.69 | 0.69166 |
Target: 5'- uCGUCUGCGGcCGCgGCCGcUCGaugacgaUGUCGg -3' miRNA: 3'- cGCAGACGUC-GCGgUGGC-AGC-------ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 46 | 0.69 | 0.683072 |
Target: 5'- uGUGUC-GgGGCGCgGCCGggugggugUGUGCCGg -3' miRNA: 3'- -CGCAGaCgUCGCGgUGGCa-------GCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 156628 | 0.69 | 0.673495 |
Target: 5'- -gGUCgccgcugGCGGCGCCGCUGcCGgGCCu -3' miRNA: 3'- cgCAGa------CGUCGCGGUGGCaGCaCGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 31710 | 0.69 | 0.702106 |
Target: 5'- cCGUCUGCA-CGCC-CCGgaGUGCCu -3' miRNA: 3'- cGCAGACGUcGCGGuGGCagCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 21722 | 0.69 | 0.702106 |
Target: 5'- cGCGUCUcuccgGCGGCugugGCUACCGUCG-GUCc -3' miRNA: 3'- -CGCAGA-----CGUCG----CGGUGGCAGCaCGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 114491 | 0.69 | 0.692612 |
Target: 5'- cGCGcuuUgUGCAGCGCCacACCGgCcUGCCGg -3' miRNA: 3'- -CGC---AgACGUCGCGG--UGGCaGcACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 135112 | 0.7 | 0.644613 |
Target: 5'- gGUGUCaugGCGGC-CCACCGUCGaccCCGa -3' miRNA: 3'- -CGCAGa--CGUCGcGGUGGCAGCac-GGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 229616 | 0.7 | 0.644613 |
Target: 5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3' miRNA: 3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 137 | 0.7 | 0.644613 |
Target: 5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3' miRNA: 3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 193123 | 0.7 | 0.625302 |
Target: 5'- gGCGUCUuccuccucGUcGuCGCCGCCGUCGcGCCu -3' miRNA: 3'- -CGCAGA--------CGuC-GCGGUGGCAGCaCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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