Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1769 | 5' | -59.8 | NC_001347.2 | + | 97600 | 0.7 | 0.662926 |
Target: 5'- cGUGUCUGgGGCcggugcuGCCGCCGUCGUugacGCg- -3' miRNA: 3'- -CGCAGACgUCG-------CGGUGGCAGCA----CGgc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 114600 | 0.71 | 0.586787 |
Target: 5'- uCGUCUgGCGgccuucuucacGCGCCACUGggGUGCCGa -3' miRNA: 3'- cGCAGA-CGU-----------CGCGGUGGCagCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 67354 | 0.71 | 0.586787 |
Target: 5'- -----cGCAGcCGCCGCCGUCGccGCCGc -3' miRNA: 3'- cgcagaCGUC-GCGGUGGCAGCa-CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 184235 | 0.72 | 0.502335 |
Target: 5'- cGUGUC-GCAGCGuUCGCCGcCGuUGCCGu -3' miRNA: 3'- -CGCAGaCGUCGC-GGUGGCaGC-ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 206737 | 0.72 | 0.502335 |
Target: 5'- aUGUUUGCGGCGCCugugguaaACCGUgGUGUCc -3' miRNA: 3'- cGCAGACGUCGCGG--------UGGCAgCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 95475 | 0.73 | 0.475329 |
Target: 5'- cGCGUCacGCGGCGCCGgUGUCG-GCgGa -3' miRNA: 3'- -CGCAGa-CGUCGCGGUgGCAGCaCGgC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 168474 | 0.74 | 0.43201 |
Target: 5'- uCGUCUc---CGCCGCCGUCGUGCUGg -3' miRNA: 3'- cGCAGAcgucGCGGUGGCAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 113420 | 0.74 | 0.43201 |
Target: 5'- cGCGUCgacaGCAGUGCUGCCGcagCGcUGCCa -3' miRNA: 3'- -CGCAGa---CGUCGCGGUGGCa--GC-ACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 125296 | 0.74 | 0.415338 |
Target: 5'- gGCGUCaGUGGCGCaACCGUCGcaGCCGc -3' miRNA: 3'- -CGCAGaCGUCGCGgUGGCAGCa-CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 129498 | 0.74 | 0.415338 |
Target: 5'- cGCGUCUGCAGCGCggCGCCGcCucGUCGg -3' miRNA: 3'- -CGCAGACGUCGCG--GUGGCaGcaCGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 38659 | 1.11 | 0.001754 |
Target: 5'- gGCGUCUGCAGCGCCACCGUCGUGCCGg -3' miRNA: 3'- -CGCAGACGUCGCGGUGGCAGCACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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