miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 191800 0.69 0.683072
Target:  5'- gGCGcUCUGCcaguuGGCGagggaUACCGUCGUGCg- -3'
miRNA:   3'- -CGC-AGACG-----UCGCg----GUGGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 46 0.69 0.683072
Target:  5'- uGUGUC-GgGGCGCgGCCGggugggugUGUGCCGg -3'
miRNA:   3'- -CGCAGaCgUCGCGgUGGCa-------GCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 210135 0.68 0.775528
Target:  5'- aGCGUUa-UAGCGCCGuCUuUCGUGCCGu -3'
miRNA:   3'- -CGCAGacGUCGCGGU-GGcAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 193275 0.68 0.775528
Target:  5'- gGCGUUacuUGCGGCGCUucgaggGCuCGUgCGUGUCGc -3'
miRNA:   3'- -CGCAG---ACGUCGCGG------UG-GCA-GCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 14282 0.68 0.766669
Target:  5'- gGCG-CUGCAGUuauGCCGCCGgagcuccccgCGcUGCCu -3'
miRNA:   3'- -CGCaGACGUCG---CGGUGGCa---------GC-ACGGc -5'
1769 5' -59.8 NC_001347.2 + 82307 0.68 0.766669
Target:  5'- cGCGUUcGaCAGCGCUGCgGUUuccacgcccaGUGCCGg -3'
miRNA:   3'- -CGCAGaC-GUCGCGGUGgCAG----------CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 88206 0.68 0.752276
Target:  5'- uGCGUCcaccGCGGaCGCCGCUcacgcuguccgagggGUCGcUGCCGc -3'
miRNA:   3'- -CGCAGa---CGUC-GCGGUGG---------------CAGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 142432 0.68 0.766669
Target:  5'- gGCGUCggcGCGGCGuCCGgCGUCGggggugGCgGu -3'
miRNA:   3'- -CGCAGa--CGUCGC-GGUgGCAGCa-----CGgC- -5'
1769 5' -59.8 NC_001347.2 + 119551 0.68 0.748639
Target:  5'- uGgGUCaGCAGC-CCACCacCGUGCCa -3'
miRNA:   3'- -CgCAGaCGUCGcGGUGGcaGCACGGc -5'
1769 5' -59.8 NC_001347.2 + 6862 0.68 0.739484
Target:  5'- gGCGU--GCAGcCGCCGagcCCGUCGacguUGCCGa -3'
miRNA:   3'- -CGCAgaCGUC-GCGGU---GGCAGC----ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 38385 0.68 0.775528
Target:  5'- cGCGUCcccGcCGGCgGCCuCCGUCuccGUGCCGc -3'
miRNA:   3'- -CGCAGa--C-GUCG-CGGuGGCAG---CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 116651 0.68 0.748639
Target:  5'- uGCugagCUGCaugagcacGGCGCCGCCGcCGUcGCCa -3'
miRNA:   3'- -CGca--GACG--------UCGCGGUGGCaGCA-CGGc -5'
1769 5' -59.8 NC_001347.2 + 190155 0.67 0.817962
Target:  5'- cGgGuUCUGCcggcauggggGGCGCCaaaacGCCGUCGgacGCCGu -3'
miRNA:   3'- -CgC-AGACG----------UCGCGG-----UGGCAGCa--CGGC- -5'
1769 5' -59.8 NC_001347.2 + 16369 0.67 0.817962
Target:  5'- aGCGaugCUGCuGCGUCACgGUCaugacGCCGa -3'
miRNA:   3'- -CGCa--GACGuCGCGGUGgCAGca---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 170401 0.67 0.809748
Target:  5'- cGCG-CUGUGGCGCgagauggaCACCGUgucgcggcacaGUGCCGg -3'
miRNA:   3'- -CGCaGACGUCGCG--------GUGGCAg----------CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 172576 0.67 0.809748
Target:  5'- gGCGUCUucGCAGCGUUcccggUCGUCGUGUg- -3'
miRNA:   3'- -CGCAGA--CGUCGCGGu----GGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 85538 0.67 0.80139
Target:  5'- aGCGUggccCUGaagAGCGCCG-CGUCGUGCg- -3'
miRNA:   3'- -CGCA----GACg--UCGCGGUgGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 156008 0.67 0.809748
Target:  5'- aGCGagCUGC-GCGUCACCGa--UGCCGg -3'
miRNA:   3'- -CGCa-GACGuCGCGGUGGCagcACGGC- -5'
1769 5' -59.8 NC_001347.2 + 20367 0.67 0.809748
Target:  5'- cGUGUCcGCGGCGUgACCacGUCaccGUGCCc -3'
miRNA:   3'- -CGCAGaCGUCGCGgUGG--CAG---CACGGc -5'
1769 5' -59.8 NC_001347.2 + 148930 0.67 0.809748
Target:  5'- cGUGUC-GCcGCGCUAUCGUCagcaucugGUGCCu -3'
miRNA:   3'- -CGCAGaCGuCGCGGUGGCAG--------CACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.