miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 85538 0.67 0.80139
Target:  5'- aGCGUggccCUGaagAGCGCCG-CGUCGUGCg- -3'
miRNA:   3'- -CGCA----GACg--UCGCGGUgGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 172576 0.67 0.809748
Target:  5'- gGCGUCUucGCAGCGUUcccggUCGUCGUGUg- -3'
miRNA:   3'- -CGCAGA--CGUCGCGGu----GGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 197611 0.67 0.817962
Target:  5'- uUGUagUGC-GCGCCGCCGacUCGcUGCCGc -3'
miRNA:   3'- cGCAg-ACGuCGCGGUGGC--AGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 164562 0.67 0.792896
Target:  5'- cGCGUaccgcCUGCuGCGCCGCCGaUUGcgGaCCGc -3'
miRNA:   3'- -CGCA-----GACGuCGCGGUGGC-AGCa-C-GGC- -5'
1769 5' -59.8 NC_001347.2 + 17113 0.67 0.792896
Target:  5'- cGCGcCaUGcCGGuCGuCCGCCGUCG-GCCGc -3'
miRNA:   3'- -CGCaG-AC-GUC-GC-GGUGGCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 109465 0.67 0.784273
Target:  5'- cGCGUCaccggcgGCGGCGCCAUgG-CGggcGCCu -3'
miRNA:   3'- -CGCAGa------CGUCGCGGUGgCaGCa--CGGc -5'
1769 5' -59.8 NC_001347.2 + 113625 0.67 0.784273
Target:  5'- aCGUCgucGCAGCGCCGgCUGgagagCGagagGCCGg -3'
miRNA:   3'- cGCAGa--CGUCGCGGU-GGCa----GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 31089 0.67 0.784273
Target:  5'- ---cCUGCAGUGCCuguaACCGgagCGUGCUc -3'
miRNA:   3'- cgcaGACGUCGCGG----UGGCa--GCACGGc -5'
1769 5' -59.8 NC_001347.2 + 16369 0.67 0.817962
Target:  5'- aGCGaugCUGCuGCGUCACgGUCaugacGCCGa -3'
miRNA:   3'- -CGCa--GACGuCGCGGUGgCAGca---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 128006 0.67 0.80139
Target:  5'- cCGUCUGU--UGCCGCUGuucaUCGUGCCc -3'
miRNA:   3'- cGCAGACGucGCGGUGGC----AGCACGGc -5'
1769 5' -59.8 NC_001347.2 + 124948 0.67 0.784273
Target:  5'- aGCGUCucuUGCGGCGCCGacuCC-UUGUagcGCCGa -3'
miRNA:   3'- -CGCAG---ACGUCGCGGU---GGcAGCA---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 1390 0.66 0.849251
Target:  5'- uCGUaCUGguG-GCUACCGUgGUGCaCGa -3'
miRNA:   3'- cGCA-GACguCgCGGUGGCAgCACG-GC- -5'
1769 5' -59.8 NC_001347.2 + 76974 0.66 0.863868
Target:  5'- -aGUCuUGcCGGCGC--CCGcCGUGCCGg -3'
miRNA:   3'- cgCAG-AC-GUCGCGguGGCaGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 229900 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5'
1769 5' -59.8 NC_001347.2 + 161581 0.66 0.85665
Target:  5'- -----cGCGGCGCCGCCGgcuacgCGU-CCGg -3'
miRNA:   3'- cgcagaCGUCGCGGUGGCa-----GCAcGGC- -5'
1769 5' -59.8 NC_001347.2 + 38259 0.66 0.849251
Target:  5'- cGCGUCcGCccCGaCCACCG-CGUGCgCGu -3'
miRNA:   3'- -CGCAGaCGucGC-GGUGGCaGCACG-GC- -5'
1769 5' -59.8 NC_001347.2 + 421 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5'
1769 5' -59.8 NC_001347.2 + 22813 0.66 0.833933
Target:  5'- aGCGUCUGU---GUCAgCGUCGUGuuGu -3'
miRNA:   3'- -CGCAGACGucgCGGUgGCAGCACggC- -5'
1769 5' -59.8 NC_001347.2 + 12082 0.66 0.841677
Target:  5'- gGCGUcCUGCAGUucucuaCCACCGUguUGCCc -3'
miRNA:   3'- -CGCA-GACGUCGc-----GGUGGCAgcACGGc -5'
1769 5' -59.8 NC_001347.2 + 192121 0.66 0.849251
Target:  5'- -gGUC-GCcGCcaCCGCCGUCGuUGCCGg -3'
miRNA:   3'- cgCAGaCGuCGc-GGUGGCAGC-ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.