miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 38659 1.11 0.001754
Target:  5'- gGCGUCUGCAGCGCCACCGUCGUGCCGg -3'
miRNA:   3'- -CGCAGACGUCGCGGUGGCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 129498 0.74 0.415338
Target:  5'- cGCGUCUGCAGCGCggCGCCGcCucGUCGg -3'
miRNA:   3'- -CGCAGACGUCGCG--GUGGCaGcaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 125296 0.74 0.415338
Target:  5'- gGCGUCaGUGGCGCaACCGUCGcaGCCGc -3'
miRNA:   3'- -CGCAGaCGUCGCGgUGGCAGCa-CGGC- -5'
1769 5' -59.8 NC_001347.2 + 168474 0.74 0.43201
Target:  5'- uCGUCUc---CGCCGCCGUCGUGCUGg -3'
miRNA:   3'- cGCAGAcgucGCGGUGGCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 113420 0.74 0.43201
Target:  5'- cGCGUCgacaGCAGUGCUGCCGcagCGcUGCCa -3'
miRNA:   3'- -CGCAGa---CGUCGCGGUGGCa--GC-ACGGc -5'
1769 5' -59.8 NC_001347.2 + 95475 0.73 0.475329
Target:  5'- cGCGUCacGCGGCGCCGgUGUCG-GCgGa -3'
miRNA:   3'- -CGCAGa-CGUCGCGGUgGCAGCaCGgC- -5'
1769 5' -59.8 NC_001347.2 + 184235 0.72 0.502335
Target:  5'- cGUGUC-GCAGCGuUCGCCGcCGuUGCCGu -3'
miRNA:   3'- -CGCAGaCGUCGC-GGUGGCaGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 206737 0.72 0.502335
Target:  5'- aUGUUUGCGGCGCCugugguaaACCGUgGUGUCc -3'
miRNA:   3'- cGCAGACGUCGCGG--------UGGCAgCACGGc -5'
1769 5' -59.8 NC_001347.2 + 114600 0.71 0.586787
Target:  5'- uCGUCUgGCGgccuucuucacGCGCCACUGggGUGCCGa -3'
miRNA:   3'- cGCAGA-CGU-----------CGCGGUGGCagCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 67354 0.71 0.586787
Target:  5'- -----cGCAGcCGCCGCCGUCGccGCCGc -3'
miRNA:   3'- cgcagaCGUC-GCGGUGGCAGCa-CGGC- -5'
1769 5' -59.8 NC_001347.2 + 193123 0.7 0.625302
Target:  5'- gGCGUCUuccuccucGUcGuCGCCGCCGUCGcGCCu -3'
miRNA:   3'- -CGCAGA--------CGuC-GCGGUGGCAGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 137 0.7 0.644613
Target:  5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3'
miRNA:   3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 229616 0.7 0.644613
Target:  5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3'
miRNA:   3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 135112 0.7 0.644613
Target:  5'- gGUGUCaugGCGGC-CCACCGUCGaccCCGa -3'
miRNA:   3'- -CGCAGa--CGUCGcGGUGGCAGCac-GGC- -5'
1769 5' -59.8 NC_001347.2 + 97600 0.7 0.662926
Target:  5'- cGUGUCUGgGGCcggugcuGCCGCCGUCGUugacGCg- -3'
miRNA:   3'- -CGCAGACgUCG-------CGGUGGCAGCA----CGgc -5'
1769 5' -59.8 NC_001347.2 + 156628 0.69 0.673495
Target:  5'- -gGUCgccgcugGCGGCGCCGCUGcCGgGCCu -3'
miRNA:   3'- cgCAGa------CGUCGCGGUGGCaGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 46 0.69 0.683072
Target:  5'- uGUGUC-GgGGCGCgGCCGggugggugUGUGCCGg -3'
miRNA:   3'- -CGCAGaCgUCGCGgUGGCa-------GCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 191800 0.69 0.683072
Target:  5'- gGCGcUCUGCcaguuGGCGagggaUACCGUCGUGCg- -3'
miRNA:   3'- -CGC-AGACG-----UCGCg----GUGGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 159448 0.69 0.69166
Target:  5'- uCGUCUGCGGcCGCgGCCGcUCGaugacgaUGUCGg -3'
miRNA:   3'- cGCAGACGUC-GCGgUGGC-AGC-------ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 114491 0.69 0.692612
Target:  5'- cGCGcuuUgUGCAGCGCCacACCGgCcUGCCGg -3'
miRNA:   3'- -CGC---AgACGUCGCGG--UGGCaGcACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.