miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 184941 0.67 0.826026
Target:  5'- cCGUCUGCAGC----UCGUCG-GCCGg -3'
miRNA:   3'- cGCAGACGUCGcgguGGCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 197611 0.67 0.817962
Target:  5'- uUGUagUGC-GCGCCGCCGacUCGcUGCCGc -3'
miRNA:   3'- cGCAg-ACGuCGCGGUGGC--AGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 16369 0.67 0.817962
Target:  5'- aGCGaugCUGCuGCGUCACgGUCaugacGCCGa -3'
miRNA:   3'- -CGCa--GACGuCGCGGUGgCAGca---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 190155 0.67 0.817962
Target:  5'- cGgGuUCUGCcggcauggggGGCGCCaaaacGCCGUCGgacGCCGu -3'
miRNA:   3'- -CgC-AGACG----------UCGCGG-----UGGCAGCa--CGGC- -5'
1769 5' -59.8 NC_001347.2 + 170401 0.67 0.809748
Target:  5'- cGCG-CUGUGGCGCgagauggaCACCGUgucgcggcacaGUGCCGg -3'
miRNA:   3'- -CGCaGACGUCGCG--------GUGGCAg----------CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 148930 0.67 0.809748
Target:  5'- cGUGUC-GCcGCGCUAUCGUCagcaucugGUGCCu -3'
miRNA:   3'- -CGCAGaCGuCGCGGUGGCAG--------CACGGc -5'
1769 5' -59.8 NC_001347.2 + 20367 0.67 0.809748
Target:  5'- cGUGUCcGCGGCGUgACCacGUCaccGUGCCc -3'
miRNA:   3'- -CGCAGaCGUCGCGgUGG--CAG---CACGGc -5'
1769 5' -59.8 NC_001347.2 + 156008 0.67 0.809748
Target:  5'- aGCGagCUGC-GCGUCACCGa--UGCCGg -3'
miRNA:   3'- -CGCa-GACGuCGCGGUGGCagcACGGC- -5'
1769 5' -59.8 NC_001347.2 + 172576 0.67 0.809748
Target:  5'- gGCGUCUucGCAGCGUUcccggUCGUCGUGUg- -3'
miRNA:   3'- -CGCAGA--CGUCGCGGu----GGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 128006 0.67 0.80139
Target:  5'- cCGUCUGU--UGCCGCUGuucaUCGUGCCc -3'
miRNA:   3'- cGCAGACGucGCGGUGGC----AGCACGGc -5'
1769 5' -59.8 NC_001347.2 + 153220 0.67 0.80139
Target:  5'- -gGUCgUGCAGCGUgaggcgcgggCGCgCGUCG-GCCGg -3'
miRNA:   3'- cgCAG-ACGUCGCG----------GUG-GCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 85538 0.67 0.80139
Target:  5'- aGCGUggccCUGaagAGCGCCG-CGUCGUGCg- -3'
miRNA:   3'- -CGCA----GACg--UCGCGGUgGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 153328 0.67 0.792896
Target:  5'- cGCGUUgGCGGCGCUugCGgagcagggagCGcaagGCCGa -3'
miRNA:   3'- -CGCAGaCGUCGCGGugGCa---------GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 164562 0.67 0.792896
Target:  5'- cGCGUaccgcCUGCuGCGCCGCCGaUUGcgGaCCGc -3'
miRNA:   3'- -CGCA-----GACGuCGCGGUGGC-AGCa-C-GGC- -5'
1769 5' -59.8 NC_001347.2 + 17113 0.67 0.792896
Target:  5'- cGCGcCaUGcCGGuCGuCCGCCGUCG-GCCGc -3'
miRNA:   3'- -CGCaG-AC-GUC-GC-GGUGGCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 124948 0.67 0.784273
Target:  5'- aGCGUCucuUGCGGCGCCGacuCC-UUGUagcGCCGa -3'
miRNA:   3'- -CGCAG---ACGUCGCGGU---GGcAGCA---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 31089 0.67 0.784273
Target:  5'- ---cCUGCAGUGCCuguaACCGgagCGUGCUc -3'
miRNA:   3'- cgcaGACGUCGCGG----UGGCa--GCACGGc -5'
1769 5' -59.8 NC_001347.2 + 113625 0.67 0.784273
Target:  5'- aCGUCgucGCAGCGCCGgCUGgagagCGagagGCCGg -3'
miRNA:   3'- cGCAGa--CGUCGCGGU-GGCa----GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 109465 0.67 0.784273
Target:  5'- cGCGUCaccggcgGCGGCGCCAUgG-CGggcGCCu -3'
miRNA:   3'- -CGCAGa------CGUCGCGGUGgCaGCa--CGGc -5'
1769 5' -59.8 NC_001347.2 + 210135 0.68 0.775528
Target:  5'- aGCGUUa-UAGCGCCGuCUuUCGUGCCGu -3'
miRNA:   3'- -CGCAGacGUCGCGGU-GGcAGCACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.