Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1769 | 5' | -59.8 | NC_001347.2 | + | 46 | 0.69 | 0.683072 |
Target: 5'- uGUGUC-GgGGCGCgGCCGggugggugUGUGCCGg -3' miRNA: 3'- -CGCAGaCgUCGCGgUGGCa-------GCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 137 | 0.7 | 0.644613 |
Target: 5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3' miRNA: 3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 421 | 0.66 | 0.849251 |
Target: 5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3' miRNA: 3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 1390 | 0.66 | 0.849251 |
Target: 5'- uCGUaCUGguG-GCUACCGUgGUGCaCGa -3' miRNA: 3'- cGCA-GACguCgCGGUGGCAgCACG-GC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 1838 | 0.66 | 0.870899 |
Target: 5'- cGCGUC---GGCGCCGCaccccgCGUCGcUGCUGa -3' miRNA: 3'- -CGCAGacgUCGCGGUG------GCAGC-ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 6862 | 0.68 | 0.739484 |
Target: 5'- gGCGU--GCAGcCGCCGagcCCGUCGacguUGCCGa -3' miRNA: 3'- -CGCAgaCGUC-GCGGU---GGCAGC----ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 12082 | 0.66 | 0.841677 |
Target: 5'- gGCGUcCUGCAGUucucuaCCACCGUguUGCCc -3' miRNA: 3'- -CGCA-GACGUCGc-----GGUGGCAgcACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 14282 | 0.68 | 0.766669 |
Target: 5'- gGCG-CUGCAGUuauGCCGCCGgagcuccccgCGcUGCCu -3' miRNA: 3'- -CGCaGACGUCG---CGGUGGCa---------GC-ACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 16369 | 0.67 | 0.817962 |
Target: 5'- aGCGaugCUGCuGCGUCACgGUCaugacGCCGa -3' miRNA: 3'- -CGCa--GACGuCGCGGUGgCAGca---CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 17113 | 0.67 | 0.792896 |
Target: 5'- cGCGcCaUGcCGGuCGuCCGCCGUCG-GCCGc -3' miRNA: 3'- -CGCaG-AC-GUC-GC-GGUGGCAGCaCGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 20367 | 0.67 | 0.809748 |
Target: 5'- cGUGUCcGCGGCGUgACCacGUCaccGUGCCc -3' miRNA: 3'- -CGCAGaCGUCGCGgUGG--CAG---CACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 21722 | 0.69 | 0.702106 |
Target: 5'- cGCGUCUcuccgGCGGCugugGCUACCGUCG-GUCc -3' miRNA: 3'- -CGCAGA-----CGUCG----CGGUGGCAGCaCGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 22813 | 0.66 | 0.833933 |
Target: 5'- aGCGUCUGU---GUCAgCGUCGUGuuGu -3' miRNA: 3'- -CGCAGACGucgCGGUgGCAGCACggC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 30597 | 0.66 | 0.849251 |
Target: 5'- gGCGgcuucCUGCGGC-CgGCCG-CGgUGCCGg -3' miRNA: 3'- -CGCa----GACGUCGcGgUGGCaGC-ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 31089 | 0.67 | 0.784273 |
Target: 5'- ---cCUGCAGUGCCuguaACCGgagCGUGCUc -3' miRNA: 3'- cgcaGACGUCGCGG----UGGCa--GCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 31710 | 0.69 | 0.702106 |
Target: 5'- cCGUCUGCA-CGCC-CCGgaGUGCCu -3' miRNA: 3'- cGCAGACGUcGCGGuGGCagCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 38259 | 0.66 | 0.849251 |
Target: 5'- cGCGUCcGCccCGaCCACCG-CGUGCgCGu -3' miRNA: 3'- -CGCAGaCGucGC-GGUGGCaGCACG-GC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 38385 | 0.68 | 0.775528 |
Target: 5'- cGCGUCcccGcCGGCgGCCuCCGUCuccGUGCCGc -3' miRNA: 3'- -CGCAGa--C-GUCG-CGGuGGCAG---CACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 38659 | 1.11 | 0.001754 |
Target: 5'- gGCGUCUGCAGCGCCACCGUCGUGCCGg -3' miRNA: 3'- -CGCAGACGUCGCGGUGGCAGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 65378 | 0.66 | 0.833933 |
Target: 5'- uGCGUCUGCccgugAGCaCCGCUGcCGcGCCc -3' miRNA: 3'- -CGCAGACG-----UCGcGGUGGCaGCaCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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