Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1769 | 5' | -59.8 | NC_001347.2 | + | 67354 | 0.71 | 0.586787 |
Target: 5'- -----cGCAGcCGCCGCCGUCGccGCCGc -3' miRNA: 3'- cgcagaCGUC-GCGGUGGCAGCa-CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 76974 | 0.66 | 0.863868 |
Target: 5'- -aGUCuUGcCGGCGC--CCGcCGUGCCGg -3' miRNA: 3'- cgCAG-AC-GUCGCGguGGCaGCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 80965 | 0.66 | 0.862439 |
Target: 5'- aGCGgacuaccacCGGCGCCGCCGU--UGCCGu -3' miRNA: 3'- -CGCagac-----GUCGCGGUGGCAgcACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 82307 | 0.68 | 0.766669 |
Target: 5'- cGCGUUcGaCAGCGCUGCgGUUuccacgcccaGUGCCGg -3' miRNA: 3'- -CGCAGaC-GUCGCGGUGgCAG----------CACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 85538 | 0.67 | 0.80139 |
Target: 5'- aGCGUggccCUGaagAGCGCCG-CGUCGUGCg- -3' miRNA: 3'- -CGCA----GACg--UCGCGGUgGCAGCACGgc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 88206 | 0.68 | 0.752276 |
Target: 5'- uGCGUCcaccGCGGaCGCCGCUcacgcuguccgagggGUCGcUGCCGc -3' miRNA: 3'- -CGCAGa---CGUC-GCGGUGG---------------CAGC-ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 95475 | 0.73 | 0.475329 |
Target: 5'- cGCGUCacGCGGCGCCGgUGUCG-GCgGa -3' miRNA: 3'- -CGCAGa-CGUCGCGGUgGCAGCaCGgC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 97600 | 0.7 | 0.662926 |
Target: 5'- cGUGUCUGgGGCcggugcuGCCGCCGUCGUugacGCg- -3' miRNA: 3'- -CGCAGACgUCG-------CGGUGGCAGCA----CGgc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 109465 | 0.67 | 0.784273 |
Target: 5'- cGCGUCaccggcgGCGGCGCCAUgG-CGggcGCCu -3' miRNA: 3'- -CGCAGa------CGUCGCGGUGgCaGCa--CGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 113420 | 0.74 | 0.43201 |
Target: 5'- cGCGUCgacaGCAGUGCUGCCGcagCGcUGCCa -3' miRNA: 3'- -CGCAGa---CGUCGCGGUGGCa--GC-ACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 113625 | 0.67 | 0.784273 |
Target: 5'- aCGUCgucGCAGCGCCGgCUGgagagCGagagGCCGg -3' miRNA: 3'- cGCAGa--CGUCGCGGU-GGCa----GCa---CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 114491 | 0.69 | 0.692612 |
Target: 5'- cGCGcuuUgUGCAGCGCCacACCGgCcUGCCGg -3' miRNA: 3'- -CGC---AgACGUCGCGG--UGGCaGcACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 114600 | 0.71 | 0.586787 |
Target: 5'- uCGUCUgGCGgccuucuucacGCGCCACUGggGUGCCGa -3' miRNA: 3'- cGCAGA-CGU-----------CGCGGUGGCagCACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 115000 | 0.66 | 0.85665 |
Target: 5'- cCG-CUGCcguacAGCGCCGCCGcUCauaaUGCCGu -3' miRNA: 3'- cGCaGACG-----UCGCGGUGGC-AGc---ACGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 116651 | 0.68 | 0.748639 |
Target: 5'- uGCugagCUGCaugagcacGGCGCCGCCGcCGUcGCCa -3' miRNA: 3'- -CGca--GACG--------UCGCGGUGGCaGCA-CGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 119551 | 0.68 | 0.748639 |
Target: 5'- uGgGUCaGCAGC-CCACCacCGUGCCa -3' miRNA: 3'- -CgCAGaCGUCGcGGUGGcaGCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 124948 | 0.67 | 0.784273 |
Target: 5'- aGCGUCucuUGCGGCGCCGacuCC-UUGUagcGCCGa -3' miRNA: 3'- -CGCAG---ACGUCGCGGU---GGcAGCA---CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 125296 | 0.74 | 0.415338 |
Target: 5'- gGCGUCaGUGGCGCaACCGUCGcaGCCGc -3' miRNA: 3'- -CGCAGaCGUCGCGgUGGCAGCa-CGGC- -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 128006 | 0.67 | 0.80139 |
Target: 5'- cCGUCUGU--UGCCGCUGuucaUCGUGCCc -3' miRNA: 3'- cGCAGACGucGCGGUGGC----AGCACGGc -5' |
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1769 | 5' | -59.8 | NC_001347.2 | + | 128439 | 0.66 | 0.833933 |
Target: 5'- gGCGcCUGCuGCGUgGCCGUCaagcgGCgCGa -3' miRNA: 3'- -CGCaGACGuCGCGgUGGCAGca---CG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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