miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 129498 0.74 0.415338
Target:  5'- cGCGUCUGCAGCGCggCGCCGcCucGUCGg -3'
miRNA:   3'- -CGCAGACGUCGCG--GUGGCaGcaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 130258 0.66 0.863868
Target:  5'- gGCGccCUGCAGUGCCACga--GUGUCa -3'
miRNA:   3'- -CGCa-GACGUCGCGGUGgcagCACGGc -5'
1769 5' -59.8 NC_001347.2 + 135112 0.7 0.644613
Target:  5'- gGUGUCaugGCGGC-CCACCGUCGaccCCGa -3'
miRNA:   3'- -CGCAGa--CGUCGcGGUGGCAGCac-GGC- -5'
1769 5' -59.8 NC_001347.2 + 142432 0.68 0.766669
Target:  5'- gGCGUCggcGCGGCGuCCGgCGUCGggggugGCgGu -3'
miRNA:   3'- -CGCAGa--CGUCGC-GGUgGCAGCa-----CGgC- -5'
1769 5' -59.8 NC_001347.2 + 148930 0.67 0.809748
Target:  5'- cGUGUC-GCcGCGCUAUCGUCagcaucugGUGCCu -3'
miRNA:   3'- -CGCAGaCGuCGCGGUGGCAG--------CACGGc -5'
1769 5' -59.8 NC_001347.2 + 153220 0.67 0.80139
Target:  5'- -gGUCgUGCAGCGUgaggcgcgggCGCgCGUCG-GCCGg -3'
miRNA:   3'- cgCAG-ACGUCGCG----------GUG-GCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 153328 0.67 0.792896
Target:  5'- cGCGUUgGCGGCGCUugCGgagcagggagCGcaagGCCGa -3'
miRNA:   3'- -CGCAGaCGUCGCGGugGCa---------GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 156008 0.67 0.809748
Target:  5'- aGCGagCUGC-GCGUCACCGa--UGCCGg -3'
miRNA:   3'- -CGCa-GACGuCGCGGUGGCagcACGGC- -5'
1769 5' -59.8 NC_001347.2 + 156628 0.69 0.673495
Target:  5'- -gGUCgccgcugGCGGCGCCGCUGcCGgGCCu -3'
miRNA:   3'- cgCAGa------CGUCGCGGUGGCaGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 159448 0.69 0.69166
Target:  5'- uCGUCUGCGGcCGCgGCCGcUCGaugacgaUGUCGg -3'
miRNA:   3'- cGCAGACGUC-GCGgUGGC-AGC-------ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 161581 0.66 0.85665
Target:  5'- -----cGCGGCGCCGCCGgcuacgCGU-CCGg -3'
miRNA:   3'- cgcagaCGUCGCGGUGGCa-----GCAcGGC- -5'
1769 5' -59.8 NC_001347.2 + 164562 0.67 0.792896
Target:  5'- cGCGUaccgcCUGCuGCGCCGCCGaUUGcgGaCCGc -3'
miRNA:   3'- -CGCA-----GACGuCGCGGUGGC-AGCa-C-GGC- -5'
1769 5' -59.8 NC_001347.2 + 168474 0.74 0.43201
Target:  5'- uCGUCUc---CGCCGCCGUCGUGCUGg -3'
miRNA:   3'- cGCAGAcgucGCGGUGGCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 170401 0.67 0.809748
Target:  5'- cGCG-CUGUGGCGCgagauggaCACCGUgucgcggcacaGUGCCGg -3'
miRNA:   3'- -CGCaGACGUCGCG--------GUGGCAg----------CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 171299 0.66 0.833933
Target:  5'- cGCGUgaGCAGCGCUACuCGcuguUUGggcgGCCu -3'
miRNA:   3'- -CGCAgaCGUCGCGGUG-GC----AGCa---CGGc -5'
1769 5' -59.8 NC_001347.2 + 172576 0.67 0.809748
Target:  5'- gGCGUCUucGCAGCGUUcccggUCGUCGUGUg- -3'
miRNA:   3'- -CGCAGA--CGUCGCGGu----GGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 184235 0.72 0.502335
Target:  5'- cGUGUC-GCAGCGuUCGCCGcCGuUGCCGu -3'
miRNA:   3'- -CGCAGaCGUCGC-GGUGGCaGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 184941 0.67 0.826026
Target:  5'- cCGUCUGCAGC----UCGUCG-GCCGg -3'
miRNA:   3'- cGCAGACGUCGcgguGGCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 190155 0.67 0.817962
Target:  5'- cGgGuUCUGCcggcauggggGGCGCCaaaacGCCGUCGgacGCCGu -3'
miRNA:   3'- -CgC-AGACG----------UCGCGG-----UGGCAGCa--CGGC- -5'
1769 5' -59.8 NC_001347.2 + 190626 0.66 0.870899
Target:  5'- uGUGaUCUGCacguAGCGCaaguccaacucCACCGUC-UGCCGc -3'
miRNA:   3'- -CGC-AGACG----UCGCG-----------GUGGCAGcACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.