miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 191800 0.69 0.683072
Target:  5'- gGCGcUCUGCcaguuGGCGagggaUACCGUCGUGCg- -3'
miRNA:   3'- -CGC-AGACG-----UCGCg----GUGGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 192121 0.66 0.849251
Target:  5'- -gGUC-GCcGCcaCCGCCGUCGuUGCCGg -3'
miRNA:   3'- cgCAGaCGuCGc-GGUGGCAGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 193123 0.7 0.625302
Target:  5'- gGCGUCUuccuccucGUcGuCGCCGCCGUCGcGCCu -3'
miRNA:   3'- -CGCAGA--------CGuC-GCGGUGGCAGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 193275 0.68 0.775528
Target:  5'- gGCGUUacuUGCGGCGCUucgaggGCuCGUgCGUGUCGc -3'
miRNA:   3'- -CGCAG---ACGUCGCGG------UG-GCA-GCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 197611 0.67 0.817962
Target:  5'- uUGUagUGC-GCGCCGCCGacUCGcUGCCGc -3'
miRNA:   3'- cGCAg-ACGuCGCGGUGGC--AGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 206737 0.72 0.502335
Target:  5'- aUGUUUGCGGCGCCugugguaaACCGUgGUGUCc -3'
miRNA:   3'- cGCAGACGUCGCGG--------UGGCAgCACGGc -5'
1769 5' -59.8 NC_001347.2 + 208820 0.66 0.833933
Target:  5'- cCG-CUGCGccGCGCCGCCGUCcucgaagcGCCa -3'
miRNA:   3'- cGCaGACGU--CGCGGUGGCAGca------CGGc -5'
1769 5' -59.8 NC_001347.2 + 210135 0.68 0.775528
Target:  5'- aGCGUUa-UAGCGCCGuCUuUCGUGCCGu -3'
miRNA:   3'- -CGCAGacGUCGCGGU-GGcAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 222422 0.66 0.849251
Target:  5'- gGCGUC-GCcGCGUCucguUCGUCGagGCCGa -3'
miRNA:   3'- -CGCAGaCGuCGCGGu---GGCAGCa-CGGC- -5'
1769 5' -59.8 NC_001347.2 + 229616 0.7 0.644613
Target:  5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3'
miRNA:   3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 229900 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.