miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 161581 0.66 0.85665
Target:  5'- -----cGCGGCGCCGCCGgcuacgCGU-CCGg -3'
miRNA:   3'- cgcagaCGUCGCGGUGGCa-----GCAcGGC- -5'
1769 5' -59.8 NC_001347.2 + 159448 0.69 0.69166
Target:  5'- uCGUCUGCGGcCGCgGCCGcUCGaugacgaUGUCGg -3'
miRNA:   3'- cGCAGACGUC-GCGgUGGC-AGC-------ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 156628 0.69 0.673495
Target:  5'- -gGUCgccgcugGCGGCGCCGCUGcCGgGCCu -3'
miRNA:   3'- cgCAGa------CGUCGCGGUGGCaGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 156008 0.67 0.809748
Target:  5'- aGCGagCUGC-GCGUCACCGa--UGCCGg -3'
miRNA:   3'- -CGCa-GACGuCGCGGUGGCagcACGGC- -5'
1769 5' -59.8 NC_001347.2 + 153328 0.67 0.792896
Target:  5'- cGCGUUgGCGGCGCUugCGgagcagggagCGcaagGCCGa -3'
miRNA:   3'- -CGCAGaCGUCGCGGugGCa---------GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 153220 0.67 0.80139
Target:  5'- -gGUCgUGCAGCGUgaggcgcgggCGCgCGUCG-GCCGg -3'
miRNA:   3'- cgCAG-ACGUCGCG----------GUG-GCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 148930 0.67 0.809748
Target:  5'- cGUGUC-GCcGCGCUAUCGUCagcaucugGUGCCu -3'
miRNA:   3'- -CGCAGaCGuCGCGGUGGCAG--------CACGGc -5'
1769 5' -59.8 NC_001347.2 + 142432 0.68 0.766669
Target:  5'- gGCGUCggcGCGGCGuCCGgCGUCGggggugGCgGu -3'
miRNA:   3'- -CGCAGa--CGUCGC-GGUgGCAGCa-----CGgC- -5'
1769 5' -59.8 NC_001347.2 + 135112 0.7 0.644613
Target:  5'- gGUGUCaugGCGGC-CCACCGUCGaccCCGa -3'
miRNA:   3'- -CGCAGa--CGUCGcGGUGGCAGCac-GGC- -5'
1769 5' -59.8 NC_001347.2 + 130258 0.66 0.863868
Target:  5'- gGCGccCUGCAGUGCCACga--GUGUCa -3'
miRNA:   3'- -CGCa-GACGUCGCGGUGgcagCACGGc -5'
1769 5' -59.8 NC_001347.2 + 129498 0.74 0.415338
Target:  5'- cGCGUCUGCAGCGCggCGCCGcCucGUCGg -3'
miRNA:   3'- -CGCAGACGUCGCG--GUGGCaGcaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 128439 0.66 0.833933
Target:  5'- gGCGcCUGCuGCGUgGCCGUCaagcgGCgCGa -3'
miRNA:   3'- -CGCaGACGuCGCGgUGGCAGca---CG-GC- -5'
1769 5' -59.8 NC_001347.2 + 128006 0.67 0.80139
Target:  5'- cCGUCUGU--UGCCGCUGuucaUCGUGCCc -3'
miRNA:   3'- cGCAGACGucGCGGUGGC----AGCACGGc -5'
1769 5' -59.8 NC_001347.2 + 125296 0.74 0.415338
Target:  5'- gGCGUCaGUGGCGCaACCGUCGcaGCCGc -3'
miRNA:   3'- -CGCAGaCGUCGCGgUGGCAGCa-CGGC- -5'
1769 5' -59.8 NC_001347.2 + 124948 0.67 0.784273
Target:  5'- aGCGUCucuUGCGGCGCCGacuCC-UUGUagcGCCGa -3'
miRNA:   3'- -CGCAG---ACGUCGCGGU---GGcAGCA---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 119551 0.68 0.748639
Target:  5'- uGgGUCaGCAGC-CCACCacCGUGCCa -3'
miRNA:   3'- -CgCAGaCGUCGcGGUGGcaGCACGGc -5'
1769 5' -59.8 NC_001347.2 + 116651 0.68 0.748639
Target:  5'- uGCugagCUGCaugagcacGGCGCCGCCGcCGUcGCCa -3'
miRNA:   3'- -CGca--GACG--------UCGCGGUGGCaGCA-CGGc -5'
1769 5' -59.8 NC_001347.2 + 115000 0.66 0.85665
Target:  5'- cCG-CUGCcguacAGCGCCGCCGcUCauaaUGCCGu -3'
miRNA:   3'- cGCaGACG-----UCGCGGUGGC-AGc---ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 114600 0.71 0.586787
Target:  5'- uCGUCUgGCGgccuucuucacGCGCCACUGggGUGCCGa -3'
miRNA:   3'- cGCAGA-CGU-----------CGCGGUGGCagCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 114491 0.69 0.692612
Target:  5'- cGCGcuuUgUGCAGCGCCacACCGgCcUGCCGg -3'
miRNA:   3'- -CGC---AgACGUCGCGG--UGGCaGcACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.