miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 113625 0.67 0.784273
Target:  5'- aCGUCgucGCAGCGCCGgCUGgagagCGagagGCCGg -3'
miRNA:   3'- cGCAGa--CGUCGCGGU-GGCa----GCa---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 113420 0.74 0.43201
Target:  5'- cGCGUCgacaGCAGUGCUGCCGcagCGcUGCCa -3'
miRNA:   3'- -CGCAGa---CGUCGCGGUGGCa--GC-ACGGc -5'
1769 5' -59.8 NC_001347.2 + 109465 0.67 0.784273
Target:  5'- cGCGUCaccggcgGCGGCGCCAUgG-CGggcGCCu -3'
miRNA:   3'- -CGCAGa------CGUCGCGGUGgCaGCa--CGGc -5'
1769 5' -59.8 NC_001347.2 + 97600 0.7 0.662926
Target:  5'- cGUGUCUGgGGCcggugcuGCCGCCGUCGUugacGCg- -3'
miRNA:   3'- -CGCAGACgUCG-------CGGUGGCAGCA----CGgc -5'
1769 5' -59.8 NC_001347.2 + 95475 0.73 0.475329
Target:  5'- cGCGUCacGCGGCGCCGgUGUCG-GCgGa -3'
miRNA:   3'- -CGCAGa-CGUCGCGGUgGCAGCaCGgC- -5'
1769 5' -59.8 NC_001347.2 + 88206 0.68 0.752276
Target:  5'- uGCGUCcaccGCGGaCGCCGCUcacgcuguccgagggGUCGcUGCCGc -3'
miRNA:   3'- -CGCAGa---CGUC-GCGGUGG---------------CAGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 85538 0.67 0.80139
Target:  5'- aGCGUggccCUGaagAGCGCCG-CGUCGUGCg- -3'
miRNA:   3'- -CGCA----GACg--UCGCGGUgGCAGCACGgc -5'
1769 5' -59.8 NC_001347.2 + 82307 0.68 0.766669
Target:  5'- cGCGUUcGaCAGCGCUGCgGUUuccacgcccaGUGCCGg -3'
miRNA:   3'- -CGCAGaC-GUCGCGGUGgCAG----------CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 80965 0.66 0.862439
Target:  5'- aGCGgacuaccacCGGCGCCGCCGU--UGCCGu -3'
miRNA:   3'- -CGCagac-----GUCGCGGUGGCAgcACGGC- -5'
1769 5' -59.8 NC_001347.2 + 76974 0.66 0.863868
Target:  5'- -aGUCuUGcCGGCGC--CCGcCGUGCCGg -3'
miRNA:   3'- cgCAG-AC-GUCGCGguGGCaGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 67354 0.71 0.586787
Target:  5'- -----cGCAGcCGCCGCCGUCGccGCCGc -3'
miRNA:   3'- cgcagaCGUC-GCGGUGGCAGCa-CGGC- -5'
1769 5' -59.8 NC_001347.2 + 65378 0.66 0.833933
Target:  5'- uGCGUCUGCccgugAGCaCCGCUGcCGcGCCc -3'
miRNA:   3'- -CGCAGACG-----UCGcGGUGGCaGCaCGGc -5'
1769 5' -59.8 NC_001347.2 + 38659 1.11 0.001754
Target:  5'- gGCGUCUGCAGCGCCACCGUCGUGCCGg -3'
miRNA:   3'- -CGCAGACGUCGCGGUGGCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 38385 0.68 0.775528
Target:  5'- cGCGUCcccGcCGGCgGCCuCCGUCuccGUGCCGc -3'
miRNA:   3'- -CGCAGa--C-GUCG-CGGuGGCAG---CACGGC- -5'
1769 5' -59.8 NC_001347.2 + 38259 0.66 0.849251
Target:  5'- cGCGUCcGCccCGaCCACCG-CGUGCgCGu -3'
miRNA:   3'- -CGCAGaCGucGC-GGUGGCaGCACG-GC- -5'
1769 5' -59.8 NC_001347.2 + 31710 0.69 0.702106
Target:  5'- cCGUCUGCA-CGCC-CCGgaGUGCCu -3'
miRNA:   3'- cGCAGACGUcGCGGuGGCagCACGGc -5'
1769 5' -59.8 NC_001347.2 + 31089 0.67 0.784273
Target:  5'- ---cCUGCAGUGCCuguaACCGgagCGUGCUc -3'
miRNA:   3'- cgcaGACGUCGCGG----UGGCa--GCACGGc -5'
1769 5' -59.8 NC_001347.2 + 30597 0.66 0.849251
Target:  5'- gGCGgcuucCUGCGGC-CgGCCG-CGgUGCCGg -3'
miRNA:   3'- -CGCa----GACGUCGcGgUGGCaGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 22813 0.66 0.833933
Target:  5'- aGCGUCUGU---GUCAgCGUCGUGuuGu -3'
miRNA:   3'- -CGCAGACGucgCGGUgGCAGCACggC- -5'
1769 5' -59.8 NC_001347.2 + 21722 0.69 0.702106
Target:  5'- cGCGUCUcuccgGCGGCugugGCUACCGUCG-GUCc -3'
miRNA:   3'- -CGCAGA-----CGUCG----CGGUGGCAGCaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.