miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1769 5' -59.8 NC_001347.2 + 20367 0.67 0.809748
Target:  5'- cGUGUCcGCGGCGUgACCacGUCaccGUGCCc -3'
miRNA:   3'- -CGCAGaCGUCGCGgUGG--CAG---CACGGc -5'
1769 5' -59.8 NC_001347.2 + 17113 0.67 0.792896
Target:  5'- cGCGcCaUGcCGGuCGuCCGCCGUCG-GCCGc -3'
miRNA:   3'- -CGCaG-AC-GUC-GC-GGUGGCAGCaCGGC- -5'
1769 5' -59.8 NC_001347.2 + 16369 0.67 0.817962
Target:  5'- aGCGaugCUGCuGCGUCACgGUCaugacGCCGa -3'
miRNA:   3'- -CGCa--GACGuCGCGGUGgCAGca---CGGC- -5'
1769 5' -59.8 NC_001347.2 + 14282 0.68 0.766669
Target:  5'- gGCG-CUGCAGUuauGCCGCCGgagcuccccgCGcUGCCu -3'
miRNA:   3'- -CGCaGACGUCG---CGGUGGCa---------GC-ACGGc -5'
1769 5' -59.8 NC_001347.2 + 12082 0.66 0.841677
Target:  5'- gGCGUcCUGCAGUucucuaCCACCGUguUGCCc -3'
miRNA:   3'- -CGCA-GACGUCGc-----GGUGGCAgcACGGc -5'
1769 5' -59.8 NC_001347.2 + 6862 0.68 0.739484
Target:  5'- gGCGU--GCAGcCGCCGagcCCGUCGacguUGCCGa -3'
miRNA:   3'- -CGCAgaCGUC-GCGGU---GGCAGC----ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 1838 0.66 0.870899
Target:  5'- cGCGUC---GGCGCCGCaccccgCGUCGcUGCUGa -3'
miRNA:   3'- -CGCAGacgUCGCGGUG------GCAGC-ACGGC- -5'
1769 5' -59.8 NC_001347.2 + 1390 0.66 0.849251
Target:  5'- uCGUaCUGguG-GCUACCGUgGUGCaCGa -3'
miRNA:   3'- cGCA-GACguCgCGGUGGCAgCACG-GC- -5'
1769 5' -59.8 NC_001347.2 + 421 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5'
1769 5' -59.8 NC_001347.2 + 137 0.7 0.644613
Target:  5'- uGUGUCgcggGCGuGUGCCGggugUGUCGUGCCGg -3'
miRNA:   3'- -CGCAGa---CGU-CGCGGUg---GCAGCACGGC- -5'
1769 5' -59.8 NC_001347.2 + 46 0.69 0.683072
Target:  5'- uGUGUC-GgGGCGCgGCCGggugggugUGUGCCGg -3'
miRNA:   3'- -CGCAGaCgUCGCGgUGGCa-------GCACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.