miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 3' -54.5 NC_001347.2 + 2097 0.66 0.980884
Target:  5'- -cGUACGGcGcCGCCGgCGggGGCGc -3'
miRNA:   3'- uuCAUGCCaCaGCGGUgGCaaCUGCa -5'
1771 3' -54.5 NC_001347.2 + 137030 0.66 0.980884
Target:  5'- gGAGUG-GGUGUgGUCACgCGagugUGACGUa -3'
miRNA:   3'- -UUCAUgCCACAgCGGUG-GCa---ACUGCA- -5'
1771 3' -54.5 NC_001347.2 + 176351 0.66 0.976386
Target:  5'- cGAGacgACGGUaacaacCGCCGCCG-UGACGUc -3'
miRNA:   3'- -UUCa--UGCCAca----GCGGUGGCaACUGCA- -5'
1771 3' -54.5 NC_001347.2 + 151646 0.66 0.971158
Target:  5'- gAAGUACGGcGU-GCCACgCGguuucUGGCGUa -3'
miRNA:   3'- -UUCAUGCCaCAgCGGUG-GCa----ACUGCA- -5'
1771 3' -54.5 NC_001347.2 + 40655 0.66 0.971158
Target:  5'- cGGG-ACGGUGUUGggGCCGggGACGg -3'
miRNA:   3'- -UUCaUGCCACAGCggUGGCaaCUGCa -5'
1771 3' -54.5 NC_001347.2 + 59468 0.66 0.969439
Target:  5'- cGGUGCGGUGUCGCCugggcaccaugugcaACC--UGGCc- -3'
miRNA:   3'- uUCAUGCCACAGCGG---------------UGGcaACUGca -5'
1771 3' -54.5 NC_001347.2 + 166012 0.66 0.968253
Target:  5'- cGGUACGGacGUCGCgCcuGCCGUUGAUu- -3'
miRNA:   3'- uUCAUGCCa-CAGCG-G--UGGCAACUGca -5'
1771 3' -54.5 NC_001347.2 + 182202 0.67 0.964499
Target:  5'- gGGGUGCGGguggcgggcugcGUCGCCuuCGgUGACGUc -3'
miRNA:   3'- -UUCAUGCCa-----------CAGCGGugGCaACUGCA- -5'
1771 3' -54.5 NC_001347.2 + 168546 0.68 0.946404
Target:  5'- ---aGCGG-GUCGCgCGCCGUcuguaccgUGGCGUg -3'
miRNA:   3'- uucaUGCCaCAGCG-GUGGCA--------ACUGCA- -5'
1771 3' -54.5 NC_001347.2 + 165107 0.7 0.878899
Target:  5'- aAGGUGCGGcgguggucguUGUCGCUGCCGUguccgcgcuuucucgGACGa -3'
miRNA:   3'- -UUCAUGCC----------ACAGCGGUGGCAa--------------CUGCa -5'
1771 3' -54.5 NC_001347.2 + 97606 0.71 0.82403
Target:  5'- uGGGgcCGGUGcUGCCGCCGUcguUGACGc -3'
miRNA:   3'- -UUCauGCCACaGCGGUGGCA---ACUGCa -5'
1771 3' -54.5 NC_001347.2 + 154986 0.72 0.780129
Target:  5'- uGAGUACGGUGgauugcgUGCCGCCGcacGugGUu -3'
miRNA:   3'- -UUCAUGCCACa------GCGGUGGCaa-CugCA- -5'
1771 3' -54.5 NC_001347.2 + 34300 1.06 0.009943
Target:  5'- aAAGUACGGUGUCGCCACCGUUGACGUg -3'
miRNA:   3'- -UUCAUGCCACAGCGGUGGCAACUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.