Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1771 | 3' | -54.5 | NC_001347.2 | + | 2097 | 0.66 | 0.980884 |
Target: 5'- -cGUACGGcGcCGCCGgCGggGGCGc -3' miRNA: 3'- uuCAUGCCaCaGCGGUgGCaaCUGCa -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 34300 | 1.06 | 0.009943 |
Target: 5'- aAAGUACGGUGUCGCCACCGUUGACGUg -3' miRNA: 3'- -UUCAUGCCACAGCGGUGGCAACUGCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 40655 | 0.66 | 0.971158 |
Target: 5'- cGGG-ACGGUGUUGggGCCGggGACGg -3' miRNA: 3'- -UUCaUGCCACAGCggUGGCaaCUGCa -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 59468 | 0.66 | 0.969439 |
Target: 5'- cGGUGCGGUGUCGCCugggcaccaugugcaACC--UGGCc- -3' miRNA: 3'- uUCAUGCCACAGCGG---------------UGGcaACUGca -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 97606 | 0.71 | 0.82403 |
Target: 5'- uGGGgcCGGUGcUGCCGCCGUcguUGACGc -3' miRNA: 3'- -UUCauGCCACaGCGGUGGCA---ACUGCa -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 137030 | 0.66 | 0.980884 |
Target: 5'- gGAGUG-GGUGUgGUCACgCGagugUGACGUa -3' miRNA: 3'- -UUCAUgCCACAgCGGUG-GCa---ACUGCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 151646 | 0.66 | 0.971158 |
Target: 5'- gAAGUACGGcGU-GCCACgCGguuucUGGCGUa -3' miRNA: 3'- -UUCAUGCCaCAgCGGUG-GCa----ACUGCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 154986 | 0.72 | 0.780129 |
Target: 5'- uGAGUACGGUGgauugcgUGCCGCCGcacGugGUu -3' miRNA: 3'- -UUCAUGCCACa------GCGGUGGCaa-CugCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 165107 | 0.7 | 0.878899 |
Target: 5'- aAGGUGCGGcgguggucguUGUCGCUGCCGUguccgcgcuuucucgGACGa -3' miRNA: 3'- -UUCAUGCC----------ACAGCGGUGGCAa--------------CUGCa -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 166012 | 0.66 | 0.968253 |
Target: 5'- cGGUACGGacGUCGCgCcuGCCGUUGAUu- -3' miRNA: 3'- uUCAUGCCa-CAGCG-G--UGGCAACUGca -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 168546 | 0.68 | 0.946404 |
Target: 5'- ---aGCGG-GUCGCgCGCCGUcuguaccgUGGCGUg -3' miRNA: 3'- uucaUGCCaCAGCG-GUGGCA--------ACUGCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 176351 | 0.66 | 0.976386 |
Target: 5'- cGAGacgACGGUaacaacCGCCGCCG-UGACGUc -3' miRNA: 3'- -UUCa--UGCCAca----GCGGUGGCaACUGCA- -5' |
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1771 | 3' | -54.5 | NC_001347.2 | + | 182202 | 0.67 | 0.964499 |
Target: 5'- gGGGUGCGGguggcgggcugcGUCGCCuuCGgUGACGUc -3' miRNA: 3'- -UUCAUGCCa-----------CAGCGGugGCaACUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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