miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 5' -56.3 NC_001347.2 + 192189 0.66 0.960257
Target:  5'- uGAGCGgccgCGGCGcGggcucGGCGuc-CCGCCGu -3'
miRNA:   3'- -CUUGCa---GUCGC-Ca----CCGCuuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 180271 0.66 0.960257
Target:  5'- cGAcCG-CAGCGGUGGCuggaGAAGCgcagCGUCGg -3'
miRNA:   3'- -CUuGCaGUCGCCACCG----CUUUG----GCGGC- -5'
1771 5' -56.3 NC_001347.2 + 117871 0.66 0.960257
Target:  5'- -cGCGUCAGaCGG-GGCGAccaCGUCa -3'
miRNA:   3'- cuUGCAGUC-GCCaCCGCUuugGCGGc -5'
1771 5' -56.3 NC_001347.2 + 34401 0.66 0.956705
Target:  5'- ---aGUCc-CGGUGuuGAAACCGCCGu -3'
miRNA:   3'- cuugCAGucGCCACcgCUUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 63823 0.66 0.956705
Target:  5'- aAGCGgCGGCGGcgaUGGCGggGCUGguugcuuuucCCGg -3'
miRNA:   3'- cUUGCaGUCGCC---ACCGCuuUGGC----------GGC- -5'
1771 5' -56.3 NC_001347.2 + 80341 0.66 0.956705
Target:  5'- aGAACa--AGCGGUGGUGGAAgCGgUGg -3'
miRNA:   3'- -CUUGcagUCGCCACCGCUUUgGCgGC- -5'
1771 5' -56.3 NC_001347.2 + 156955 0.66 0.956705
Target:  5'- --cCGUCAucGUGGUGGCG-AGCgCGCUc -3'
miRNA:   3'- cuuGCAGU--CGCCACCGCuUUG-GCGGc -5'
1771 5' -56.3 NC_001347.2 + 105958 0.66 0.952943
Target:  5'- cGAGCG-CAGCGucGGCGA-GCCGCg- -3'
miRNA:   3'- -CUUGCaGUCGCcaCCGCUuUGGCGgc -5'
1771 5' -56.3 NC_001347.2 + 125295 0.66 0.952943
Target:  5'- uGGCGUCAGU---GGCGcAACCGUCGc -3'
miRNA:   3'- cUUGCAGUCGccaCCGCuUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 178079 0.66 0.948967
Target:  5'- aGGCGUCGGCguugggcaaGGUGGCGcu-UCGCUa -3'
miRNA:   3'- cUUGCAGUCG---------CCACCGCuuuGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 153245 0.66 0.948967
Target:  5'- -cGCGUCGGcCGGcgacGGCGGu-UCGCCGu -3'
miRNA:   3'- cuUGCAGUC-GCCa---CCGCUuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 84615 0.66 0.944774
Target:  5'- gGAGcCGUCGuggguggccucGCGGUGGCu--GCCGCUa -3'
miRNA:   3'- -CUU-GCAGU-----------CGCCACCGcuuUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 59073 0.66 0.944774
Target:  5'- uGGGCG-CGGCGGUuuuGGUGgcGCgGCCu -3'
miRNA:   3'- -CUUGCaGUCGCCA---CCGCuuUGgCGGc -5'
1771 5' -56.3 NC_001347.2 + 152181 0.66 0.940362
Target:  5'- --cCGUCuuuccCGGcGGCGAAACCGCgCGc -3'
miRNA:   3'- cuuGCAGuc---GCCaCCGCUUUGGCG-GC- -5'
1771 5' -56.3 NC_001347.2 + 67287 0.66 0.940362
Target:  5'- --cCGaCuGCGGUGGUGccuCCGCCGc -3'
miRNA:   3'- cuuGCaGuCGCCACCGCuuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 229701 0.67 0.935729
Target:  5'- --gUGUCGGCGGUGuGCGcgGCC-UCGg -3'
miRNA:   3'- cuuGCAGUCGCCAC-CGCuuUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 22726 0.67 0.935729
Target:  5'- -uACGUCc-UGGUGGUGA--CCGCCGc -3'
miRNA:   3'- cuUGCAGucGCCACCGCUuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 222 0.67 0.935729
Target:  5'- --gUGUCGGCGGUGuGCGcgGCC-UCGg -3'
miRNA:   3'- cuuGCAGUCGCCAC-CGCuuUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 100813 0.67 0.935729
Target:  5'- gGGACGUguaaaaccCGGCGcGgcauaGCGGAGCCGCCa -3'
miRNA:   3'- -CUUGCA--------GUCGC-Cac---CGCUUUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 162170 0.67 0.935729
Target:  5'- ---aGUCGGCGGgcgggGGCGugauccgacCCGCCa -3'
miRNA:   3'- cuugCAGUCGCCa----CCGCuuu------GGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.