miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 5' -56.3 NC_001347.2 + 34338 1.08 0.005058
Target:  5'- aGAACGUCAGCGGUGGCGAAACCGCCGu -3'
miRNA:   3'- -CUUGCAGUCGCCACCGCUUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 7896 0.81 0.260985
Target:  5'- aGGugGUCAGUGGcGGCGAcaaGGCCGCCu -3'
miRNA:   3'- -CUugCAGUCGCCaCCGCU---UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 63055 0.76 0.464851
Target:  5'- cGGCGUCAugGGUGGCGGagGACUGCCGg -3'
miRNA:   3'- cUUGCAGUcgCCACCGCU--UUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 173663 0.75 0.558755
Target:  5'- aGGugG-CGGCGGUGGCGGcaagaagcacGACCGCgGu -3'
miRNA:   3'- -CUugCaGUCGCCACCGCU----------UUGGCGgC- -5'
1771 5' -56.3 NC_001347.2 + 182234 0.73 0.676909
Target:  5'- uGACGUCGGUGGUGGCuGuAGGCUaCCGa -3'
miRNA:   3'- cUUGCAGUCGCCACCG-C-UUUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 143000 0.72 0.706173
Target:  5'- cGGCGgCGGCGGUGGUGGAggagguugcGCCGCa- -3'
miRNA:   3'- cUUGCaGUCGCCACCGCUU---------UGGCGgc -5'
1771 5' -56.3 NC_001347.2 + 142449 0.72 0.712934
Target:  5'- cGGCGUCGGgGGUGGCGGucuucuucucggcgAGuCCGUCGc -3'
miRNA:   3'- cUUGCAGUCgCCACCGCU--------------UU-GGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 229653 0.72 0.715822
Target:  5'- --gUGUCgcgGGCGuGUGGCGGGugUGCCGg -3'
miRNA:   3'- cuuGCAG---UCGC-CACCGCUUugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 174 0.72 0.715822
Target:  5'- --gUGUCgcgGGCGuGUGGCGGGugUGCCGg -3'
miRNA:   3'- cuuGCAG---UCGC-CACCGCUUugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 168801 0.72 0.715822
Target:  5'- uGGACGcgCGcGCGGUGGCcAAACgGCCGc -3'
miRNA:   3'- -CUUGCa-GU-CGCCACCGcUUUGgCGGC- -5'
1771 5' -56.3 NC_001347.2 + 189819 0.71 0.744334
Target:  5'- uGGGCGgcaaGGCGGUGGUaGGucGACCGCCc -3'
miRNA:   3'- -CUUGCag--UCGCCACCG-CU--UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 110132 0.71 0.77202
Target:  5'- -cGCGaUCAGCGa-GGcCGAAGCCGCCa -3'
miRNA:   3'- cuUGC-AGUCGCcaCC-GCUUUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 21401 0.71 0.781026
Target:  5'- cAGCGugcUCAGCuGGUGGCucauGCCGCCa -3'
miRNA:   3'- cUUGC---AGUCG-CCACCGcuu-UGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 165105 0.7 0.789908
Target:  5'- gGAAgGUgCGGCGGUGGuCGuugucGCUGCCGu -3'
miRNA:   3'- -CUUgCA-GUCGCCACC-GCuu---UGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 161960 0.7 0.795173
Target:  5'- uGGCGUCGGgGGUGGUcacguccaguCCGCCGc -3'
miRNA:   3'- cUUGCAGUCgCCACCGcuuu------GGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 106238 0.7 0.815724
Target:  5'- aGGCGgCGGCGGUGGCGuuggcAGCaauagcaGCCGa -3'
miRNA:   3'- cUUGCaGUCGCCACCGCu----UUGg------CGGC- -5'
1771 5' -56.3 NC_001347.2 + 44039 0.7 0.815724
Target:  5'- cGACGgCAGCGGUGGUGG---CGCUGg -3'
miRNA:   3'- cUUGCaGUCGCCACCGCUuugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 88524 0.7 0.824027
Target:  5'- gGGugGUCAaaGUGGUGaCGccGCCGCCGg -3'
miRNA:   3'- -CUugCAGU--CGCCACcGCuuUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 167194 0.69 0.840139
Target:  5'- --cCGUCaAGCGGaggcaaaGGCGAGGCCgcGCCGg -3'
miRNA:   3'- cuuGCAG-UCGCCa------CCGCUUUGG--CGGC- -5'
1771 5' -56.3 NC_001347.2 + 13949 0.69 0.840139
Target:  5'- cGGGCG-CGG-GGUGGCGAAGCgggagCGCUGa -3'
miRNA:   3'- -CUUGCaGUCgCCACCGCUUUG-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.