miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 5' -56.3 NC_001347.2 + 174 0.72 0.715822
Target:  5'- --gUGUCgcgGGCGuGUGGCGGGugUGCCGg -3'
miRNA:   3'- cuuGCAG---UCGC-CACCGCUUugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 222 0.67 0.935729
Target:  5'- --gUGUCGGCGGUGuGCGcgGCC-UCGg -3'
miRNA:   3'- cuuGCAGUCGCCAC-CGCuuUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 1990 0.69 0.870193
Target:  5'- cGACGUCccgccAGCGGcgagcGGCacggagacgGAGGCCGCCGg -3'
miRNA:   3'- cUUGCAG-----UCGCCa----CCG---------CUUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 7896 0.81 0.260985
Target:  5'- aGGugGUCAGUGGcGGCGAcaaGGCCGCCu -3'
miRNA:   3'- -CUugCAGUCGCCaCCGCU---UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 11676 0.67 0.930375
Target:  5'- cGAUGUCAGUcuuuucgGGUGGUuuacagaccGGAGCUGCCa -3'
miRNA:   3'- cUUGCAGUCG-------CCACCG---------CUUUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 13949 0.69 0.840139
Target:  5'- cGGGCG-CGG-GGUGGCGAAGCgggagCGCUGa -3'
miRNA:   3'- -CUUGCaGUCgCCACCGCUUUG-----GCGGC- -5'
1771 5' -56.3 NC_001347.2 + 21401 0.71 0.781026
Target:  5'- cAGCGugcUCAGCuGGUGGCucauGCCGCCa -3'
miRNA:   3'- cUUGC---AGUCG-CCACCGcuu-UGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 22128 0.67 0.92049
Target:  5'- aAGCGgCAGCaugGGCGAcACCGCCu -3'
miRNA:   3'- cUUGCaGUCGccaCCGCUuUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 22726 0.67 0.935729
Target:  5'- -uACGUCc-UGGUGGUGA--CCGCCGc -3'
miRNA:   3'- cuUGCAGucGCCACCGCUuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 34338 1.08 0.005058
Target:  5'- aGAACGUCAGCGGUGGCGAAACCGCCGu -3'
miRNA:   3'- -CUUGCAGUCGCCACCGCUUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 34401 0.66 0.956705
Target:  5'- ---aGUCc-CGGUGuuGAAACCGCCGu -3'
miRNA:   3'- cuugCAGucGCCACcgCUUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 37161 0.68 0.890659
Target:  5'- cGAAUuUgGGCGGUGGCGGccuuGGCgGUCGg -3'
miRNA:   3'- -CUUGcAgUCGCCACCGCU----UUGgCGGC- -5'
1771 5' -56.3 NC_001347.2 + 41172 0.69 0.870193
Target:  5'- --cCG-CGGCGGUGGCGAcugGGCCGaCa -3'
miRNA:   3'- cuuGCaGUCGCCACCGCU---UUGGCgGc -5'
1771 5' -56.3 NC_001347.2 + 44039 0.7 0.815724
Target:  5'- cGACGgCAGCGGUGGUGG---CGCUGg -3'
miRNA:   3'- cUUGCaGUCGCCACCGCUuugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 47120 0.67 0.935729
Target:  5'- cGAugGUaugGGCGGcGGCGGcaauGGCCGCgGc -3'
miRNA:   3'- -CUugCAg--UCGCCaCCGCU----UUGGCGgC- -5'
1771 5' -56.3 NC_001347.2 + 59073 0.66 0.944774
Target:  5'- uGGGCG-CGGCGGUuuuGGUGgcGCgGCCu -3'
miRNA:   3'- -CUUGCaGUCGCCA---CCGCuuUGgCGGc -5'
1771 5' -56.3 NC_001347.2 + 63055 0.76 0.464851
Target:  5'- cGGCGUCAugGGUGGCGGagGACUGCCGg -3'
miRNA:   3'- cUUGCAGUcgCCACCGCU--UUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 63823 0.66 0.956705
Target:  5'- aAGCGgCGGCGGcgaUGGCGggGCUGguugcuuuucCCGg -3'
miRNA:   3'- cUUGCaGUCGCC---ACCGCuuUGGC----------GGC- -5'
1771 5' -56.3 NC_001347.2 + 65857 0.68 0.879975
Target:  5'- cAGCGcCAGCGGcUggccuucggcacgcuGGCGGgccGACCGCCGc -3'
miRNA:   3'- cUUGCaGUCGCC-A---------------CCGCU---UUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 66777 0.68 0.897061
Target:  5'- cGACGUCcgcccgacGGUGGUGGCGGcggcGGCaguggaGCCGa -3'
miRNA:   3'- cUUGCAG--------UCGCCACCGCU----UUGg-----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.