miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 5' -56.3 NC_001347.2 + 67287 0.66 0.940362
Target:  5'- --cCGaCuGCGGUGGUGccuCCGCCGc -3'
miRNA:   3'- cuuGCaGuCGCCACCGCuuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 67553 0.67 0.934295
Target:  5'- uGAugGU-GGUGGUGGUuguuggaggaagaaGAGACCGCgGa -3'
miRNA:   3'- -CUugCAgUCGCCACCG--------------CUUUGGCGgC- -5'
1771 5' -56.3 NC_001347.2 + 75049 0.68 0.877221
Target:  5'- uAACGagCGGCaacGUGGCGAagcGACCGCCc -3'
miRNA:   3'- cUUGCa-GUCGc--CACCGCU---UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 75739 0.68 0.909216
Target:  5'- cGGGCG-CAGUGGUGGUaucaucguccuGGAAaaaCGCCGu -3'
miRNA:   3'- -CUUGCaGUCGCCACCG-----------CUUUg--GCGGC- -5'
1771 5' -56.3 NC_001347.2 + 76630 0.67 0.92049
Target:  5'- -uGCGgccgCGGCGGaGGcCGAAGCgGCCu -3'
miRNA:   3'- cuUGCa---GUCGCCaCC-GCUUUGgCGGc -5'
1771 5' -56.3 NC_001347.2 + 78707 0.67 0.930872
Target:  5'- --cCGUCcgcuGGCGGUGGaaGAcAACCGCCu -3'
miRNA:   3'- cuuGCAG----UCGCCACCg-CU-UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 80341 0.66 0.956705
Target:  5'- aGAACa--AGCGGUGGUGGAAgCGgUGg -3'
miRNA:   3'- -CUUGcagUCGCCACCGCUUUgGCgGC- -5'
1771 5' -56.3 NC_001347.2 + 84615 0.66 0.944774
Target:  5'- gGAGcCGUCGuggguggccucGCGGUGGCu--GCCGCUa -3'
miRNA:   3'- -CUU-GCAGU-----------CGCCACCGcuuUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 88524 0.7 0.824027
Target:  5'- gGGugGUCAaaGUGGUGaCGccGCCGCCGg -3'
miRNA:   3'- -CUugCAGU--CGCCACcGCuuUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 100813 0.67 0.935729
Target:  5'- gGGACGUguaaaaccCGGCGcGgcauaGCGGAGCCGCCa -3'
miRNA:   3'- -CUUGCA--------GUCGC-Cac---CGCUUUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 105958 0.66 0.952943
Target:  5'- cGAGCG-CAGCGucGGCGA-GCCGCg- -3'
miRNA:   3'- -CUUGCaGUCGCcaCCGCUuUGGCGgc -5'
1771 5' -56.3 NC_001347.2 + 106238 0.7 0.815724
Target:  5'- aGGCGgCGGCGGUGGCGuuggcAGCaauagcaGCCGa -3'
miRNA:   3'- cUUGCaGUCGCCACCGCu----UUGg------CGGC- -5'
1771 5' -56.3 NC_001347.2 + 110132 0.71 0.77202
Target:  5'- -cGCGaUCAGCGa-GGcCGAAGCCGCCa -3'
miRNA:   3'- cuUGC-AGUCGCcaCC-GCUUUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 112808 0.68 0.884044
Target:  5'- aGACGgcaaaggCAGCGGUgcuGGCGAAgcagaaggagggGCCGCUa -3'
miRNA:   3'- cUUGCa------GUCGCCA---CCGCUU------------UGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 117871 0.66 0.960257
Target:  5'- -cGCGUCAGaCGG-GGCGAccaCGUCa -3'
miRNA:   3'- cuUGCAGUC-GCCaCCGCUuugGCGGc -5'
1771 5' -56.3 NC_001347.2 + 125295 0.66 0.952943
Target:  5'- uGGCGUCAGU---GGCGcAACCGUCGc -3'
miRNA:   3'- cUUGCAGUCGccaCCGCuUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 126487 0.69 0.862232
Target:  5'- --cCGUCAGCGcguguccgcuuucGUGGCGuacGCCGUCGc -3'
miRNA:   3'- cuuGCAGUCGC-------------CACCGCuu-UGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 129736 0.68 0.908629
Target:  5'- gGAACGUUgcugcgcaAGCuGGUGGUGGAAaagaucuUCGCCGu -3'
miRNA:   3'- -CUUGCAG--------UCG-CCACCGCUUU-------GGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 142449 0.72 0.712934
Target:  5'- cGGCGUCGGgGGUGGCGGucuucuucucggcgAGuCCGUCGc -3'
miRNA:   3'- cUUGCAGUCgCCACCGCU--------------UU-GGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 142572 0.68 0.884044
Target:  5'- cGGCGUCGGCGGgagcaGCGggGgCGgCGg -3'
miRNA:   3'- cUUGCAGUCGCCac---CGCuuUgGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.