miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1771 5' -56.3 NC_001347.2 + 229701 0.67 0.935729
Target:  5'- --gUGUCGGCGGUGuGCGcgGCC-UCGg -3'
miRNA:   3'- cuuGCAGUCGCCAC-CGCuuUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 229653 0.72 0.715822
Target:  5'- --gUGUCgcgGGCGuGUGGCGGGugUGCCGg -3'
miRNA:   3'- cuuGCAG---UCGC-CACCGCUUugGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 208043 0.67 0.930375
Target:  5'- cGACGUCGgagucGCGGcguucguUGGCGccGCUGCCGc -3'
miRNA:   3'- cUUGCAGU-----CGCC-------ACCGCuuUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 206190 0.68 0.903248
Target:  5'- --cCGUCcaGGUaGGUGGgGuAGGCCGCCGa -3'
miRNA:   3'- cuuGCAG--UCG-CCACCgC-UUUGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 192189 0.66 0.960257
Target:  5'- uGAGCGgccgCGGCGcGggcucGGCGuc-CCGCCGu -3'
miRNA:   3'- -CUUGCa---GUCGC-Ca----CCGCuuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 189819 0.71 0.744334
Target:  5'- uGGGCGgcaaGGCGGUGGUaGGucGACCGCCc -3'
miRNA:   3'- -CUUGCag--UCGCCACCG-CU--UUGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 182234 0.73 0.676909
Target:  5'- uGACGUCGGUGGUGGCuGuAGGCUaCCGa -3'
miRNA:   3'- cUUGCAGUCGCCACCG-C-UUUGGcGGC- -5'
1771 5' -56.3 NC_001347.2 + 180271 0.66 0.960257
Target:  5'- cGAcCG-CAGCGGUGGCuggaGAAGCgcagCGUCGg -3'
miRNA:   3'- -CUuGCaGUCGCCACCG----CUUUG----GCGGC- -5'
1771 5' -56.3 NC_001347.2 + 178079 0.66 0.948967
Target:  5'- aGGCGUCGGCguugggcaaGGUGGCGcu-UCGCUa -3'
miRNA:   3'- cUUGCAGUCG---------CCACCGCuuuGGCGGc -5'
1771 5' -56.3 NC_001347.2 + 173663 0.75 0.558755
Target:  5'- aGGugG-CGGCGGUGGCGGcaagaagcacGACCGCgGu -3'
miRNA:   3'- -CUugCaGUCGCCACCGCU----------UUGGCGgC- -5'
1771 5' -56.3 NC_001347.2 + 173544 0.69 0.850999
Target:  5'- cGGCGgCGGUGGUGGCGGcagccucucuucgcuGGCCaauGCCGg -3'
miRNA:   3'- cUUGCaGUCGCCACCGCU---------------UUGG---CGGC- -5'
1771 5' -56.3 NC_001347.2 + 168801 0.72 0.715822
Target:  5'- uGGACGcgCGcGCGGUGGCcAAACgGCCGc -3'
miRNA:   3'- -CUUGCa-GU-CGCCACCGcUUUGgCGGC- -5'
1771 5' -56.3 NC_001347.2 + 167194 0.69 0.840139
Target:  5'- --cCGUCaAGCGGaggcaaaGGCGAGGCCgcGCCGg -3'
miRNA:   3'- cuuGCAG-UCGCCa------CCGCUUUGG--CGGC- -5'
1771 5' -56.3 NC_001347.2 + 166056 0.69 0.855544
Target:  5'- cGGGCGUCAuGCGGagucgcGGCGGuugGGgCGCCGa -3'
miRNA:   3'- -CUUGCAGU-CGCCa-----CCGCU---UUgGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 165105 0.7 0.789908
Target:  5'- gGAAgGUgCGGCGGUGGuCGuugucGCUGCCGu -3'
miRNA:   3'- -CUUgCA-GUCGCCACC-GCuu---UGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 162170 0.67 0.935729
Target:  5'- ---aGUCGGCGGgcgggGGCGugauccgacCCGCCa -3'
miRNA:   3'- cuugCAGUCGCCa----CCGCuuu------GGCGGc -5'
1771 5' -56.3 NC_001347.2 + 161960 0.7 0.795173
Target:  5'- uGGCGUCGGgGGUGGUcacguccaguCCGCCGc -3'
miRNA:   3'- cUUGCAGUCgCCACCGcuuu------GGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 156955 0.66 0.956705
Target:  5'- --cCGUCAucGUGGUGGCG-AGCgCGCUc -3'
miRNA:   3'- cuuGCAGU--CGCCACCGCuUUG-GCGGc -5'
1771 5' -56.3 NC_001347.2 + 153245 0.66 0.948967
Target:  5'- -cGCGUCGGcCGGcgacGGCGGu-UCGCCGu -3'
miRNA:   3'- cuUGCAGUC-GCCa---CCGCUuuGGCGGC- -5'
1771 5' -56.3 NC_001347.2 + 152307 0.67 0.929372
Target:  5'- cAGCGgCGGCGGUGGUGAcuGgggacggugaugauGCUGCUGa -3'
miRNA:   3'- cUUGCaGUCGCCACCGCU--U--------------UGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.