miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1772 5' -57 NC_001347.2 + 39555 0.66 0.938832
Target:  5'- gGCGcCGGACA-CCUCCg--ACGUCCAc -3'
miRNA:   3'- -CGCuGUCUGUaGGGGGacgUGCAGGU- -5'
1772 5' -57 NC_001347.2 + 126413 0.66 0.938832
Target:  5'- cGCGACcuGGGCAccaucaUCCCCaC-GCACGccUCCAu -3'
miRNA:   3'- -CGCUG--UCUGU------AGGGG-GaCGUGC--AGGU- -5'
1772 5' -57 NC_001347.2 + 200019 0.66 0.924083
Target:  5'- cGCGAC-GACAUCCUCucguCUGCugagguGCGUUCGg -3'
miRNA:   3'- -CGCUGuCUGUAGGGG----GACG------UGCAGGU- -5'
1772 5' -57 NC_001347.2 + 38428 0.66 0.924083
Target:  5'- gGCGGC-GACGUCguCCCCgccGC-CGUCCc -3'
miRNA:   3'- -CGCUGuCUGUAG--GGGGa--CGuGCAGGu -5'
1772 5' -57 NC_001347.2 + 182899 0.67 0.918722
Target:  5'- cGCGGCucgccGuCGUUCUCCUGCucuuCGUCCu -3'
miRNA:   3'- -CGCUGu----CuGUAGGGGGACGu---GCAGGu -5'
1772 5' -57 NC_001347.2 + 77964 0.67 0.918722
Target:  5'- cGCGGCaAGcACAUCCgCUUGUACGUggcggCCGa -3'
miRNA:   3'- -CGCUG-UC-UGUAGGgGGACGUGCA-----GGU- -5'
1772 5' -57 NC_001347.2 + 30500 0.67 0.91314
Target:  5'- cGUGACGGGgGuUUCCCCUGaCACGUa-- -3'
miRNA:   3'- -CGCUGUCUgU-AGGGGGAC-GUGCAggu -5'
1772 5' -57 NC_001347.2 + 130042 0.67 0.907338
Target:  5'- cGCGAC-GACGUCUgcgaUCUGCagaaGCGUCCGc -3'
miRNA:   3'- -CGCUGuCUGUAGGg---GGACG----UGCAGGU- -5'
1772 5' -57 NC_001347.2 + 38025 0.67 0.907338
Target:  5'- gGCGGCGGGCgccgacucgcGUCCCagcgCCaGCGCGcCCAg -3'
miRNA:   3'- -CGCUGUCUG----------UAGGG----GGaCGUGCaGGU- -5'
1772 5' -57 NC_001347.2 + 90736 0.67 0.89508
Target:  5'- aGUGACGGcgccCGUCCCaCgaGcCACGUCCGc -3'
miRNA:   3'- -CGCUGUCu---GUAGGG-GgaC-GUGCAGGU- -5'
1772 5' -57 NC_001347.2 + 149495 0.68 0.875101
Target:  5'- gGCGAgGGugGuUUUCCCUGCGCcgagaaGUCCGa -3'
miRNA:   3'- -CGCUgUCugU-AGGGGGACGUG------CAGGU- -5'
1772 5' -57 NC_001347.2 + 156500 0.68 0.875101
Target:  5'- aGCGGCAGcggucCGUCCCUgUgGCGCGcCCGc -3'
miRNA:   3'- -CGCUGUCu----GUAGGGGgA-CGUGCaGGU- -5'
1772 5' -57 NC_001347.2 + 111655 0.68 0.845665
Target:  5'- cGCGGCAGACAUCagcagcaCgUUGCG-GUCCGu -3'
miRNA:   3'- -CGCUGUCUGUAGg------GgGACGUgCAGGU- -5'
1772 5' -57 NC_001347.2 + 113878 0.71 0.722976
Target:  5'- cGCGACcGACAacgaaggcugUCCcuggCCCUGCGCGUgCAa -3'
miRNA:   3'- -CGCUGuCUGU----------AGG----GGGACGUGCAgGU- -5'
1772 5' -57 NC_001347.2 + 104532 0.71 0.694073
Target:  5'- cGCG-CGGGCGUgCCUCCUGCAUGcuggCCGu -3'
miRNA:   3'- -CGCuGUCUGUA-GGGGGACGUGCa---GGU- -5'
1772 5' -57 NC_001347.2 + 125927 0.77 0.378637
Target:  5'- cCGACGGACcacugcgucuUCCCCCUGCugGUCa- -3'
miRNA:   3'- cGCUGUCUGu---------AGGGGGACGugCAGgu -5'
1772 5' -57 NC_001347.2 + 34136 1.1 0.003068
Target:  5'- cGCGACAGACAUCCCCCUGCACGUCCAu -3'
miRNA:   3'- -CGCUGUCUGUAGGGGGACGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.