miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17738 5' -47.7 NC_004616.1 + 16137 0.69 0.882172
Target:  5'- --cUAGGU-AGUcgauuaACCGGAGUAUCUGUu -3'
miRNA:   3'- uuuAUCCGuUCA------UGGCUUCAUGGACG- -5'
17738 5' -47.7 NC_004616.1 + 30498 0.67 0.925667
Target:  5'- -----uGCuuuUGCUGGAGUACCUGCa -3'
miRNA:   3'- uuuaucCGuucAUGGCUUCAUGGACG- -5'
17738 5' -47.7 NC_004616.1 + 44261 0.74 0.588894
Target:  5'- ----uGGCAGGUACUucGGUACUUGCc -3'
miRNA:   3'- uuuauCCGUUCAUGGcuUCAUGGACG- -5'
17738 5' -47.7 NC_004616.1 + 44333 1.1 0.003645
Target:  5'- aAAAUAGGCAAGUACCGAAGUACCUGCc -3'
miRNA:   3'- -UUUAUCCGUUCAUGGCUUCAUGGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.