miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17746 3' -46.2 NC_004629.1 + 170230 0.66 0.999999
Target:  5'- gAUGGAUCAccGUUAACAgaaaUGUCAa-- -3'
miRNA:   3'- aUACCUAGUuaCGGUUGU----ACAGUagu -5'
17746 3' -46.2 NC_004629.1 + 196479 0.67 0.999995
Target:  5'- aUAUGGAUUAAUuggGCU---GUGUCGUCAu -3'
miRNA:   3'- -AUACCUAGUUA---CGGuugUACAGUAGU- -5'
17746 3' -46.2 NC_004629.1 + 114333 0.67 0.999995
Target:  5'- gAUGGAUCAAc-CCAuaGCAUGUCGg-- -3'
miRNA:   3'- aUACCUAGUUacGGU--UGUACAGUagu -5'
17746 3' -46.2 NC_004629.1 + 79671 0.68 0.999949
Target:  5'- cAUGGAUCuggucuauuuaGAUaCCAgaaauGCAUGUCAUCAc -3'
miRNA:   3'- aUACCUAG-----------UUAcGGU-----UGUACAGUAGU- -5'
17746 3' -46.2 NC_004629.1 + 66004 0.69 0.999911
Target:  5'- aGUGGAUCuAAUGgCAGCA-GUCAaCAa -3'
miRNA:   3'- aUACCUAG-UUACgGUUGUaCAGUaGU- -5'
17746 3' -46.2 NC_004629.1 + 76360 0.69 0.999895
Target:  5'- -nUGGAccacguaguucaaucUCAGUGCCAACuaguUCAUCAa -3'
miRNA:   3'- auACCU---------------AGUUACGGUUGuac-AGUAGU- -5'
17746 3' -46.2 NC_004629.1 + 229697 0.69 0.999849
Target:  5'- uUAUGGAUUggUGUgAGCggGUUAUUAa -3'
miRNA:   3'- -AUACCUAGuuACGgUUGuaCAGUAGU- -5'
17746 3' -46.2 NC_004629.1 + 47874 0.69 0.999849
Target:  5'- gUAUGGGUCuuuAUGCCAAaguUGUUgAUCAa -3'
miRNA:   3'- -AUACCUAGu--UACGGUUgu-ACAG-UAGU- -5'
17746 3' -46.2 NC_004629.1 + 192559 0.69 0.999805
Target:  5'- cGUGGuu--AUGCCAAUAUGUCAa-- -3'
miRNA:   3'- aUACCuaguUACGGUUGUACAGUagu -5'
17746 3' -46.2 NC_004629.1 + 183419 0.69 0.999751
Target:  5'- gGUGGGUCAGUGCaAAC-UGUCGa-- -3'
miRNA:   3'- aUACCUAGUUACGgUUGuACAGUagu -5'
17746 3' -46.2 NC_004629.1 + 28370 0.7 0.999229
Target:  5'- --aGGAUCAGcaucUGCUAaaccuucuaGCAUGUCGUCu -3'
miRNA:   3'- auaCCUAGUU----ACGGU---------UGUACAGUAGu -5'
17746 3' -46.2 NC_004629.1 + 126580 0.71 0.998842
Target:  5'- gAUGGAauaAAUGCUGAUggGUCAUCAa -3'
miRNA:   3'- aUACCUag-UUACGGUUGuaCAGUAGU- -5'
17746 3' -46.2 NC_004629.1 + 268940 0.71 0.998842
Target:  5'- -uUGGAUCAAUGCCcaguCGUuUCAUCc -3'
miRNA:   3'- auACCUAGUUACGGuu--GUAcAGUAGu -5'
17746 3' -46.2 NC_004629.1 + 76387 0.71 0.9983
Target:  5'- -cUGGAUCAccaccgGCCuuACAUGUCAUUg -3'
miRNA:   3'- auACCUAGUua----CGGu-UGUACAGUAGu -5'
17746 3' -46.2 NC_004629.1 + 164672 0.75 0.976893
Target:  5'- -uUGGGUCAAUGCCucuUAUGUCAg-- -3'
miRNA:   3'- auACCUAGUUACGGuu-GUACAGUagu -5'
17746 3' -46.2 NC_004629.1 + 6062 1.09 0.040879
Target:  5'- uUAUGGAUCAAUGCCAACAUGUCAUCAa -3'
miRNA:   3'- -AUACCUAGUUACGGUUGUACAGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.