miRNA: 3'- -ACUAAUGUgGGCCAUAUUCGaUGguc -5'
miRNA: 3'- acuaaUGUGGGCca-UAU--UCGAUGGUC- -5'
miRNA: 3'- -ACUaAUGUGGGCCa-----UAUUCGAUGGuc -5'
miRNA: 3'- -ACUAAUGUGGGCCAUAUUCGAUGGUC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17748 | 5' | -47.9 | NC_004629.1 | + | 47363 | 0.66 | 0.999977 |
|
Target: 5'- cUGGUUACA-CCGGUAUGGGUaACa-- -3' miRNA: 3'- -ACUAAUGUgGGCCAUAUUCGaUGguc -5' |
|||||||
| 17748 | 5' | -47.9 | NC_004629.1 | + | 243105 | 0.67 | 0.999945 |
|
Target: 5'- ----aAUACCCGcugAUAaaAGCUGCCAGa -3' miRNA: 3'- acuaaUGUGGGCca-UAU--UCGAUGGUC- -5' |
|||||||
| 17748 | 5' | -47.9 | NC_004629.1 | + | 149038 | 0.69 | 0.999375 |
|
Target: 5'- aUGAaUGCGCCUGGcgguaaGUGGGCUACUg- -3' miRNA: 3'- -ACUaAUGUGGGCCa-----UAUUCGAUGGuc -5' |
|||||||
| 17748 | 5' | -47.9 | NC_004629.1 | + | 19365 | 1.1 | 0.027466 |
|
Target: 5'- uUGAUUACACCCGGUAUAAGCUACCAGu -3' miRNA: 3'- -ACUAAUGUGGGCCAUAUUCGAUGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home