miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17749 3' -45.6 NC_004629.1 + 88955 0.66 1
Target:  5'- aGAuc-GAUAGaaaGCUCACAAUGCUAUu -3'
miRNA:   3'- aCUuuuCUAUUa--CGGGUGUUACGGUG- -5'
17749 3' -45.6 NC_004629.1 + 211409 0.66 0.999999
Target:  5'- gGGAAGGGUuuuaGGUGCUaaaCGCAuucaGUGCCAUg -3'
miRNA:   3'- aCUUUUCUA----UUACGG---GUGU----UACGGUG- -5'
17749 3' -45.6 NC_004629.1 + 72071 0.66 0.999999
Target:  5'- -cGGAAGAUAGUGgCCACAuc-CUACa -3'
miRNA:   3'- acUUUUCUAUUACgGGUGUuacGGUG- -5'
17749 3' -45.6 NC_004629.1 + 101439 0.67 0.999998
Target:  5'- ----cAGGUAAUGUUCaaACAGUGCCAa -3'
miRNA:   3'- acuuuUCUAUUACGGG--UGUUACGGUg -5'
17749 3' -45.6 NC_004629.1 + 237010 0.68 0.999991
Target:  5'- -aAAAAGAUGAUaaCCaaauGCGAUGCCACc -3'
miRNA:   3'- acUUUUCUAUUAcgGG----UGUUACGGUG- -5'
17749 3' -45.6 NC_004629.1 + 194717 0.68 0.999982
Target:  5'- cUGGGAAuGGUGGUGUaugggagaauauCC-CAAUGCCGCa -3'
miRNA:   3'- -ACUUUU-CUAUUACG------------GGuGUUACGGUG- -5'
17749 3' -45.6 NC_004629.1 + 267029 0.68 0.999982
Target:  5'- aGAAuAAGAgca--CCCACGGUGCCAa -3'
miRNA:   3'- aCUU-UUCUauuacGGGUGUUACGGUg -5'
17749 3' -45.6 NC_004629.1 + 160312 0.69 0.999941
Target:  5'- aGAAGAGG-AGUGCUCAUAuugGaCCACa -3'
miRNA:   3'- aCUUUUCUaUUACGGGUGUua-C-GGUG- -5'
17749 3' -45.6 NC_004629.1 + 172249 0.69 0.999919
Target:  5'- uUGucu-GAUAAaaacaacUGCCCACAcugGCCACg -3'
miRNA:   3'- -ACuuuuCUAUU-------ACGGGUGUua-CGGUG- -5'
17749 3' -45.6 NC_004629.1 + 195464 0.69 0.999897
Target:  5'- uUGGGAAGAUAAUGUCUGguAUGgCAUc -3'
miRNA:   3'- -ACUUUUCUAUUACGGGUguUACgGUG- -5'
17749 3' -45.6 NC_004629.1 + 169474 0.72 0.998936
Target:  5'- -aAAAGGaAUGAUGUCCA--GUGCCACg -3'
miRNA:   3'- acUUUUC-UAUUACGGGUguUACGGUG- -5'
17749 3' -45.6 NC_004629.1 + 25884 1.11 0.036313
Target:  5'- uUGAAAAGAUAAUGCCCACAAUGCCACc -3'
miRNA:   3'- -ACUUUUCUAUUACGGGUGUUACGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.