miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17754 3' -46.9 NC_004629.1 + 114877 0.66 0.999994
Target:  5'- aAUUCA--GAUAAGUCCCUCUccuuuaggAGAGg -3'
miRNA:   3'- -UAAGUauUUAUUCGGGGAGGca------UCUC- -5'
17754 3' -46.9 NC_004629.1 + 10590 0.67 0.999984
Target:  5'- --aUAUAA---GGCCCCUCCcuucggGUAGGGg -3'
miRNA:   3'- uaaGUAUUuauUCGGGGAGG------CAUCUC- -5'
17754 3' -46.9 NC_004629.1 + 125916 0.67 0.999979
Target:  5'- --gCAUAA--AAGCCCCUCUacGGAGg -3'
miRNA:   3'- uaaGUAUUuaUUCGGGGAGGcaUCUC- -5'
17754 3' -46.9 NC_004629.1 + 71311 0.67 0.999961
Target:  5'- --aCGUAAGUAAGacgacauaaaCCCCUCUccauGUGGAGa -3'
miRNA:   3'- uaaGUAUUUAUUC----------GGGGAGG----CAUCUC- -5'
17754 3' -46.9 NC_004629.1 + 266663 0.69 0.999681
Target:  5'- -aUCAUAuu---GCCCCUCCauaUGGAGg -3'
miRNA:   3'- uaAGUAUuuauuCGGGGAGGc--AUCUC- -5'
17754 3' -46.9 NC_004629.1 + 266343 0.69 0.999498
Target:  5'- ---aAUGAcaaacAUAAGCCCCUCCauaUGGAGg -3'
miRNA:   3'- uaagUAUU-----UAUUCGGGGAGGc--AUCUC- -5'
17754 3' -46.9 NC_004629.1 + 274107 0.72 0.996019
Target:  5'- -aUCGUAGAUuAGUCCUUCCaGUGGAu -3'
miRNA:   3'- uaAGUAUUUAuUCGGGGAGG-CAUCUc -5'
17754 3' -46.9 NC_004629.1 + 126234 1.09 0.035388
Target:  5'- cAUUCAUAAAUAAGCCCCUCCGUAGAGg -3'
miRNA:   3'- -UAAGUAUUUAUUCGGGGAGGCAUCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.