miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17755 3' -39.9 NC_004629.1 + 50394 0.73 1
Target:  5'- aAAGGAAGGGUGAAGAUAUAGUCUg-- -3'
miRNA:   3'- -UUUUUUUUUAUUUCUGUAUCGGGgag -5'
17755 3' -39.9 NC_004629.1 + 10563 0.7 1
Target:  5'- cGAGAAAAAucuucacagcaaGUAAcGAUAUaaGGCCCCUCc -3'
miRNA:   3'- -UUUUUUUU------------UAUUuCUGUA--UCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 249163 0.7 1
Target:  5'- uAGAGAAAAccGAAGAUAUAGCCUa-- -3'
miRNA:   3'- -UUUUUUUUuaUUUCUGUAUCGGGgag -5'
17755 3' -39.9 NC_004629.1 + 36411 0.69 1
Target:  5'- uGAAAuuGAGUAAAGAUGUGGCUCa-- -3'
miRNA:   3'- -UUUUuuUUUAUUUCUGUAUCGGGgag -5'
17755 3' -39.9 NC_004629.1 + 264014 0.67 1
Target:  5'- -uGAAGAAAcu-GGugGUAGCCCUg- -3'
miRNA:   3'- uuUUUUUUUauuUCugUAUCGGGGag -5'
17755 3' -39.9 NC_004629.1 + 35209 0.66 1
Target:  5'- uAAAAAAAAUAaaaaaaAAGACAUAauGCCCUc- -3'
miRNA:   3'- uUUUUUUUUAU------UUCUGUAU--CGGGGag -5'
17755 3' -39.9 NC_004629.1 + 224793 0.66 1
Target:  5'- cAAAAuAAAUAGGGACucucauuaagAGUCCCUUa -3'
miRNA:   3'- uUUUUuUUUAUUUCUGua--------UCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 267145 0.68 1
Target:  5'- aAAAAAuAAAUAuAAGAgcUAGCCCCUa -3'
miRNA:   3'- -UUUUUuUUUAU-UUCUguAUCGGGGAg -5'
17755 3' -39.9 NC_004629.1 + 258904 0.7 1
Target:  5'- aAGAAAAAAAUAAAgGGCuccgaagAGCCCUUUa -3'
miRNA:   3'- -UUUUUUUUUAUUU-CUGua-----UCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 154924 0.73 1
Target:  5'- -uGAAGAGAUGuuGGCGUuauauGCCCCUa -3'
miRNA:   3'- uuUUUUUUUAUuuCUGUAu----CGGGGAg -5'
17755 3' -39.9 NC_004629.1 + 44048 0.73 1
Target:  5'- aGAAAAGAAAUGu-GACAUAaacCCCCUCc -3'
miRNA:   3'- -UUUUUUUUUAUuuCUGUAUc--GGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 114885 0.73 1
Target:  5'- aAAAAAAGAAUucAGAUA-AGUCCCUCu -3'
miRNA:   3'- -UUUUUUUUUAuuUCUGUaUCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 120462 0.83 0.990821
Target:  5'- -uAGAAGAGUAAcAGACAUAGgCCCUCc -3'
miRNA:   3'- uuUUUUUUUAUU-UCUGUAUCgGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 71653 0.95 0.621614
Target:  5'- uAAAAAAAAAUAAAGACA-GGCCCCUCu -3'
miRNA:   3'- -UUUUUUUUUAUUUCUGUaUCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 265498 1.08 0.192787
Target:  5'- uAAAGAAAAUAAAGACAUAGCCCCUCu -3'
miRNA:   3'- uUUUUUUUUAUUUCUGUAUCGGGGAG- -5'
17755 3' -39.9 NC_004629.1 + 126970 1.1 0.158485
Target:  5'- uAAAAAAAAAUAAAGACAUAGCCCCUCu -3'
miRNA:   3'- -UUUUUUUUUAUUUCUGUAUCGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.