miRNA: 3'- gaUGA--CGUAAGUAuuGACCUCAa-CGU- -5'
miRNA: 3'- -GAUGA-CGUAAGUAUUGaccUCAACGu -5'
miRNA: 3'- gaUGaCGUAAGUAUUGaCCUCaACGU- -5'
miRNA: 3'- -GAUGACGUAAGUAUUGACCUCAACGU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17757 | 5' | -45.9 | NC_004629.1 | + | 196258 | 0.67 | 0.999993 |
|
Target: 5'- -aACUugGCGUUCAU--CUGGAGUagGCAa -3' miRNA: 3'- gaUGA--CGUAAGUAuuGACCUCAa-CGU- -5' |
|||||||
| 17757 | 5' | -45.9 | NC_004629.1 | + | 146439 | 0.69 | 0.99994 |
|
Target: 5'- gCUACUgGCGUUCGUAGCc--AGUUGCu -3' miRNA: 3'- -GAUGA-CGUAAGUAUUGaccUCAACGu -5' |
|||||||
| 17757 | 5' | -45.9 | NC_004629.1 | + | 149328 | 0.73 | 0.995583 |
|
Target: 5'- -gGC-GCAUUCAUGGCcGGAGcUGCAc -3' miRNA: 3'- gaUGaCGUAAGUAUUGaCCUCaACGU- -5' |
|||||||
| 17757 | 5' | -45.9 | NC_004629.1 | + | 146713 | 1.1 | 0.036292 |
|
Target: 5'- uCUACUGCAUUCAUAACUGGAGUUGCAg -3' miRNA: 3'- -GAUGACGUAAGUAUUGACCUCAACGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home