miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17759 5' -46.1 NC_004629.1 + 120494 0.66 0.999998
Target:  5'- gGGAGGGCUuUAUGUUGUau--UACa-- -3'
miRNA:   3'- -CCUCCCGA-AUACGACAauuuAUGgaa -5'
17759 5' -46.1 NC_004629.1 + 120768 0.67 0.999995
Target:  5'- gGGAGGGCcUAUGuCUGUUAcucuUCUa -3'
miRNA:   3'- -CCUCCCGaAUAC-GACAAUuuauGGAa -5'
17759 5' -46.1 NC_004629.1 + 167685 0.67 0.999986
Target:  5'- gGGAGGGCaUUAUGUUcuUUAAcUACCa- -3'
miRNA:   3'- -CCUCCCG-AAUACGAc-AAUUuAUGGaa -5'
17759 5' -46.1 NC_004629.1 + 85160 0.68 0.99998
Target:  5'- gGGAGGGCaUUAUGUUGUauuuUAcAUugCa- -3'
miRNA:   3'- -CCUCCCG-AAUACGACA----AUuUAugGaa -5'
17759 5' -46.1 NC_004629.1 + 73341 0.68 0.999964
Target:  5'- uGGAGGGCUUA-GCUcacucuauuGUUGAAgauucGCCa- -3'
miRNA:   3'- -CCUCCCGAAUaCGA---------CAAUUUa----UGGaa -5'
17759 5' -46.1 NC_004629.1 + 143068 0.69 0.999914
Target:  5'- uGGAGGGgaUUUAUGCUGUUAA--GCa-- -3'
miRNA:   3'- -CCUCCC--GAAUACGACAAUUuaUGgaa -5'
17759 5' -46.1 NC_004629.1 + 23513 0.69 0.999854
Target:  5'- cGGGGaGGCuUUAUGUUGUUAAAaACUa- -3'
miRNA:   3'- -CCUC-CCG-AAUACGACAAUUUaUGGaa -5'
17759 5' -46.1 NC_004629.1 + 132952 0.7 0.999515
Target:  5'- gGGAGGGCUUAUGaC-GUUAAccAUCUa -3'
miRNA:   3'- -CCUCCCGAAUAC-GaCAAUUuaUGGAa -5'
17759 5' -46.1 NC_004629.1 + 133226 0.71 0.998632
Target:  5'- gGGAGGGCaUUAUGUUGUUuagAAAUuauCCa- -3'
miRNA:   3'- -CCUCCCG-AAUACGACAA---UUUAu--GGaa -5'
17759 5' -46.1 NC_004629.1 + 35169 0.73 0.994255
Target:  5'- gGGAGGGCUUAUGCcauuaagauAAUAUCUa -3'
miRNA:   3'- -CCUCCCGAAUACGacaau----UUAUGGAa -5'
17759 5' -46.1 NC_004629.1 + 208264 0.73 0.993716
Target:  5'- gGGAGGGCaUUAUGUUGUUuua-ACCa- -3'
miRNA:   3'- -CCUCCCG-AAUACGACAAuuuaUGGaa -5'
17759 5' -46.1 NC_004629.1 + 171716 0.75 0.981922
Target:  5'- gGGAGGGCUUAUGUUGcUUAuaauuauuuuAAUACUa- -3'
miRNA:   3'- -CCUCCCGAAUACGAC-AAU----------UUAUGGaa -5'
17759 5' -46.1 NC_004629.1 + 207990 0.79 0.893244
Target:  5'- gGGAGGGCUUAUGCcGUUAA--ACUUUu -3'
miRNA:   3'- -CCUCCCGAAUACGaCAAUUuaUGGAA- -5'
17759 5' -46.1 NC_004629.1 + 178418 0.82 0.773763
Target:  5'- gGGAGGGCUUAUGCUGUcauguugGAAUAgCg- -3'
miRNA:   3'- -CCUCCCGAAUACGACAa------UUUAUgGaa -5'
17759 5' -46.1 NC_004629.1 + 158340 0.82 0.773763
Target:  5'- aGAGGGCUUAUGCUGUUAu---CCa- -3'
miRNA:   3'- cCUCCCGAAUACGACAAUuuauGGaa -5'
17759 5' -46.1 NC_004629.1 + 25476 0.92 0.345001
Target:  5'- gGGAGGGCUUAUGCUGUUAAGUAa--- -3'
miRNA:   3'- -CCUCCCGAAUACGACAAUUUAUggaa -5'
17759 5' -46.1 NC_004629.1 + 167959 1.08 0.044896
Target:  5'- gGGAGGGCUUAUGCUGUUAAAUACCUUc -3'
miRNA:   3'- -CCUCCCGAAUACGACAAUUUAUGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.